ggKbase home page

13_1_40cm_scaffold_5867

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_5867_1
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..257
DNA (255bp) protein (85aa)
Alkaline phosphatase {ECO:0000313|EMBL:KFE69324.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalang
hypothetical protein id=12557407 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_5867_2
unknown

Not on your lists

260..643
DNA (384bp) protein (128aa)

This feature has no annotations

13_1_40cm_scaffold_5867_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

685..1575
DNA (891bp) protein (297aa)
ABC transporter ATPase Tax=RBG_16_Gemmatimonadetes_66_8_curated
ABC transporter ATPase id=24473775 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ABC transporter ATP-binding protein
13_1_40cm_scaffold_5867_4
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1583..2596
DNA (1014bp) protein (338aa)
ABC multidrug efflux pump, inner membrane subunit Tax=RBG_13_Deltaproteobacteria_61_14_curated
Putative integral membrane transport protein id=1718300 bin=GWB2_Deltaproteobacteria_65_81 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
13_1_40cm_scaffold_5867_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2606..4345)
DNA (1740bp) protein (580aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7I3_GEMAT
putative protein kinase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative protein kinase
13_1_40cm_scaffold_5867_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(4664..5713)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2U0X9_9DELT
Predicted membrane-bound metal-dependent hydrolase {ECO:0000313|EMBL:CDM65558.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methyla
hydrolase
13_1_40cm_scaffold_5867_7
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

6353..6850
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A754_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH38064.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
13_1_40cm_scaffold_5867_8
unknown

Not on your lists

6941..7405
DNA (465bp) protein (155aa)

This feature has no annotations

13_1_40cm_scaffold_5867_9

Not on your lists

7405..8259
DNA (855bp) protein (285aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium BAC-L1N9 RepID=Q4JIR2_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AAY89250.1}; TaxID=333371 species="Bacteria; environmental samples.;" source="uncultured bacterium BAC-L1N9.;"
hypothetical protein
13_1_40cm_scaffold_5867_10
unknown

Not on your lists

8256..8768
DNA (513bp) protein (171aa)

This feature has no annotations

13_1_40cm_scaffold_5867_11

Not on your lists

8772..9776
DNA (1005bp) protein (335aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium BAC-L1N9 RepID=Q4JIR1_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AAY89251.1}; TaxID=333371 species="Bacteria; environmental samples.;" source="uncultured bacterium BAC-L1N9.;"
13_1_40cm_scaffold_5867_12

Not on your lists

9719..10630
DNA (912bp) protein (304aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium BAC-L1N9 RepID=Q4JIR1_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AAY89251.1}; TaxID=333371 species="Bacteria; environmental samples.;" source="uncultured bacterium BAC-L1N9.;"
13_1_40cm_scaffold_5867_13

Not on your lists

10615..11163
DNA (549bp) protein (183aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium BAC-L1N9 RepID=Q4JIR1_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AAY89251.1}; TaxID=333371 species="Bacteria; environmental samples.;" source="uncultured bacterium BAC-L1N9.;"
hypothetical protein
13_1_40cm_scaffold_5867_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(11147..13705)
DNA (2559bp) protein (853aa)
nitrogen specific signal transduction histidine kinase NtrB (EC:2.7.13.3); K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=GWA2_Rokubacteria_70_23_curated
Multi-sensor hybrid histidine kinase n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IHA2_9CHLR
multi-sensor hybrid histidine kinase
13_1_40cm_scaffold_5867_15
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

13754..15082
DNA (1329bp) protein (443aa)
transaldolase phosphoglucose isomerase (EC:2.2.1.2 5.3.1.9); K13810 transaldolase / glucose-6-phosphate isomerase [EC:2.2.1.2 5.3.1.9] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein id=14429319 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
transaldolase
13_1_40cm_scaffold_5867_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

15079..16497
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9B1_GEMAT
glycoside hydrolase family 38
Glycoside hydrolase family 38 {ECO:0000313|EMBL:AHG91178.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying 16 items

View Taxonomy