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13_1_40cm_scaffold_4828

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_4828_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2..352
DNA (351bp) protein (117aa)
Polysaccharide biosynthesis/export protein n=1 Tax=Bacteroides coprocola DSM 17136 RepID=B3JEC3_9BACE
polysaccharide export protein
Polysaccharide export protein {ECO:0000313|EMBL:AHG88395.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_4828_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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361..1434
DNA (1074bp) protein (358aa)
Lipopolysaccharide biosynthesis protein n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AJH6_IGNAJ
lipopolysaccharide biosynthesis protein
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:AHG91029.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_4828_3
CG_Wirth_01, Wirthbacteria, Bacteria

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1449..2231
DNA (783bp) protein (261aa)
Polysaccharide deacetylase n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QEU9_DESB2
polysaccharide deacetylase Tax=CG_Wirth_01
polysaccharide deacetylase
13_1_40cm_scaffold_4828_4
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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2274..3494
DNA (1221bp) protein (407aa)
Glycosyl transferase family 1 n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SH26_9BACT
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP67181.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="
putative glycosyltransferase
13_1_40cm_scaffold_4828_5
Paenibacillus sp., Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3451..4644)
DNA (1194bp) protein (398aa)
O-antigen polymerase n=1 Tax=Paenibacillus sp. JC66 RepID=UPI000288C13F
13_1_40cm_scaffold_4828_6
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4669..5289)
DNA (621bp) protein (207aa)
Biotin synthesis protein n=1 Tax=Pseudomonas aeruginosa BL13 RepID=U9I8Q9_PSEAI
Biotin synthase {ECO:0000313|EMBL:EQL39833.1}; TaxID=1350465 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VR
yafE; putative biotin synthesis protein
13_1_40cm_scaffold_4828_7
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5315..6256)
DNA (942bp) protein (314aa)
Putative glycosyltransferase n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I8B6_METCZ
glycosyltransferase
Putative glycosyltransferase {ECO:0000313|EMBL:AFC98969.1}; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella conr
13_1_40cm_scaffold_4828_8
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(6272..6979)
DNA (708bp) protein (236aa)
Glycosyl transferase, family 2 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q026F4_SOLUE
glycosyl transferase family protein
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABJ83115.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter
13_1_40cm_scaffold_4828_9

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comp(7022..8566)
DNA (1545bp) protein (515aa)
Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) RepID=I4BX40_ANAMD
Uncharacterized protein {ECO:0000313|EMBL:KKM94507.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
membrane protein
13_1_40cm_scaffold_4828_10
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8577..9725)
DNA (1149bp) protein (383aa)
Glycosyl transferase, group 1 n=1 Tax=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) RepID=Q3J8B6_NITOC
group 1 glycosyl transferase
Glycosyl transferase family 1 {ECO:0000313|EMBL:KFI18729.1}; TaxID=314279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oc
13_1_40cm_scaffold_4828_11
RBG_13_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

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comp(9726..10859)
DNA (1134bp) protein (378aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILI4_KORVE
NAD-dependent epimerase/dehydratase Tax=RBG_13_Chloroflexi_56_8_curated
NAD-dependent epimerase/dehydratase
13_1_40cm_scaffold_4828_12

Not on your lists

comp(11010..12041)
DNA (1032bp) protein (344aa)
Glycosyl transferase, family 4 (Fragment) n=1 Tax=sediment metagenome RepID=D9PJP7_9ZZZZ
Glycosyl transferase, family 4 {ECO:0000313|EMBL:EFK96217.1}; Flags: Fragment;; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
glycosyl transferase family protein
13_1_40cm_scaffold_4828_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13279..14439)
DNA (1161bp) protein (387aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5V9_GEMAT
ATP-binding region ATPase domain protein
13_1_40cm_scaffold_4828_14
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14747..15382)
DNA (636bp) protein (212aa)
transcriptional regulator n=1 Tax=Streptomyces sp. TOR3209 RepID=UPI0002D3E9B0
Uncharacterized protein {ECO:0000313|EMBL:KFN49098.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas compost
chemotaxis protein CheY
13_1_40cm_scaffold_4828_15
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(15600..16703)
DNA (1104bp) protein (368aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14); K01791 UDP-N-acetylglucosamine 2-epimerase [EC:5.1.3.14] Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NDF9_DESAR
13_1_40cm_scaffold_4828_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(16703..17479)
DNA (777bp) protein (259aa)
Polysaccharide export protein n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E8W3_GEOLS
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_scaffold_4828_17
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(17476..19464)
DNA (1989bp) protein (663aa)
glmS; glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB63_GEMAT
13_1_40cm_scaffold_4828_18
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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20021..20692
DNA (672bp) protein (224aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DSJ0_THIND
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:AGA32579.1}; TaxID=1255043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ec
13_1_40cm_scaffold_4828_19
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(20717..22423)
DNA (1707bp) protein (569aa)
Putative exopolysaccharide biosynthesis protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W1_GEMAT
putative exopolysaccharide biosynthesis protein
Putative exopolysaccharide biosynthesis protein {ECO:0000313|EMBL:BAH37621.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimon
13_1_40cm_scaffold_4828_20
unknown

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comp(22437..23096)
DNA (660bp) protein (220aa)

This feature has no annotations

13_1_40cm_scaffold_4828_21
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

23409..24965
DNA (1557bp) protein (519aa)
NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W0_GEMAT
NtrC family two-component response regulator
NtrC family two-component response regulator {ECO:0000313|EMBL:BAH37620.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas
13_1_40cm_scaffold_4828_22
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

25429..25833
DNA (405bp) protein (135aa)
Putative glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W7_GEMAT
sugar transferase
Sugar transferase {ECO:0000313|EMBL:AHG90032.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_4828_23
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

25835..26704
DNA (870bp) protein (290aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5U2_GEMAT
eight transmembrane protein EpsH
Eight transmembrane protein EpsH {ECO:0000313|EMBL:AHG90014.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_4828_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

26701..27354
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5U3_GEMAT
EpsI family protein
EpsI family protein {ECO:0000313|EMBL:AHG90015.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_4828_25
Rhodopirellula europaea, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

27387..28220
DNA (834bp) protein (278aa)
Lysophospholipase n=1 Tax=Rhodopirellula europaea 6C RepID=M2BAK5_9PLAN
Lysophospholipase {ECO:0000313|EMBL:EMB18708.1}; TaxID=1263867 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea
alpha/beta hydrolase fold protein
13_1_40cm_scaffold_4828_26
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists

28217..29839
DNA (1623bp) protein (541aa)
L-aspartate oxidase (EC:1.4.3.16) Tax=RBG_16_Chloroflexi_57_8_curated
L-aspartate oxidase (EC:1.4.3.16)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00037D7FE5
13_1_40cm_scaffold_4828_27
RBG_13_Aminicenantes_64_14_curated, Aminicenantes, Bacteria

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29779..30606
DNA (828bp) protein (276aa)
3-oxoacyl-(acyl-carrier-protein) reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RBG_13_Aminicenantes_64_14_curated
hypothetical protein n=1 Tax=Streptomyces sulphureus RepID=UPI00035C1E6B
3-oxoacyl-[acyl-carrier-protein] reductase
13_1_40cm_scaffold_4828_28
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(30631..31038)
DNA (408bp) protein (136aa)
UbiD family decarboxylase Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
UbiD decarboxylase family protein id=4770811 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying 28 items

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