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13_1_40cm_scaffold_7869

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_7869_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(1..732)
DNA (732bp) protein (244aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J7_GEMAT
13_1_40cm_scaffold_7869_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1129..1503)
DNA (375bp) protein (125aa)
single-stranded DNA-binding protein n=1 Tax=Nocardiopsis potens RepID=UPI00034A49AD
SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_7869_trna_1
unknown

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1675..1758
DNA (84bp)
transferRNA
13_1_40cm_scaffold_7869_3
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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comp(1765..3198)
DNA (1434bp) protein (478aa)
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LK99_CHLTF id=5224911 bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
dinucleotide-utilizing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
molybdopterin and thiamine biosynthesis family dinucleotide-utilizing protein
13_1_40cm_scaffold_7869_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(3180..3557)
DNA (378bp) protein (126aa)
Predicted metal-dependent protease of the PAD1/JAB1 superfamily {ECO:0000313|EMBL:CDM66172.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrino
Mov34/MPN/PAD-1 family protein id=24573334 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Mov34/MPN/PAD-1
13_1_40cm_scaffold_7869_5
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

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comp(3628..4455)
DNA (828bp) protein (276aa)
cysteine synthase (EC:2.5.1.47)
Cysteine synthase {ECO:0000313|EMBL:CCW34367.1}; EC=2.5.1.47 {ECO:0000313|EMBL:CCW34367.1};; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Ch
Cysteine synthase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EVI9_9BACT
13_1_40cm_scaffold_7869_6
unknown

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4804..5280
DNA (477bp) protein (159aa)

This feature has no annotations

13_1_40cm_scaffold_7869_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(5462..5914)
DNA (453bp) protein (151aa)
Rrf2 family DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4K0_GEMAT
Rrf2 family DNA-binding protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Rrf2 family DNA-binding protein
13_1_40cm_scaffold_7869_8
unknown

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comp(5974..7011)
DNA (1038bp) protein (346aa)

This feature has no annotations

13_1_40cm_scaffold_7869_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(7079..7492)
DNA (414bp) protein (138aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_7869_10
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(7539..8942)
DNA (1404bp) protein (468aa)
aspA; aspartate ammonia-lyase (EC:4.3.1.1); K01744 aspartate ammonia-lyase [EC:4.3.1.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
aspA; aspartate ammonia-lyase (EC:4.3.1.1)
Aspartate ammonia-lyase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4K1_GEMAT
13_1_40cm_scaffold_7869_11
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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8995..9321
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X350_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
cupin 2 barrel domain-containing protein
13_1_40cm_scaffold_7869_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(9332..9847)
DNA (516bp) protein (172aa)
Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_7869_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9841..10140)
DNA (300bp) protein (100aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEB4_GEMAT
Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Tax=RBG_16_Gemmatimonadetes_66_8_curated
Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD
13_1_40cm_scaffold_7869_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10299..10937)
DNA (639bp) protein (213aa)
beta-lactamase-like protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Zn-dependent hydrolases, including glyoxylases id=14429445 bin=bin3_NC10 species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin3_NC10 organism_group=NC10
beta-lactamase domain protein
13_1_40cm_scaffold_7869_15
unknown

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comp(10934..11020)
DNA (87bp) protein (29aa)

This feature has no annotations

Displaying 16 items

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