ggKbase home page

13_1_40cm_scaffold_278

Search features with annotation key words

Displaying 23 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_278_1
unknown

Not on your lists

comp(68..490)
DNA (423bp) protein (141aa)

This feature has no annotations

13_1_40cm_scaffold_278_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(499..1443)
DNA (945bp) protein (315aa)
Membrane protease subunit, stomatin/prohibitin n=1 Tax=Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4) RepID=I4D831_DESAJ
membrane protease subunit, stomatin/prohibitin Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
membrane protease subunit, stomatin/prohibitin
13_1_40cm_scaffold_278_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1569..1943)
DNA (375bp) protein (125aa)
Transcriptional regulator, GntR family n=3 Tax=Parabacteroides RepID=B7B719_9PORP
putative transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
GntR family transcriptional regulator
13_1_40cm_scaffold_278_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(2036..2419)
DNA (384bp) protein (128aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_scaffold_278_5
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

2485..4527
DNA (2043bp) protein (681aa)
Peptidase S9, prolyl oligopeptidase active site domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SC4_SOLUE
peptidase S9 prolyl oligopeptidase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
peptidase S9 prolyl oligopeptidase
13_1_40cm_scaffold_278_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

4594..7473
DNA (2880bp) protein (960aa)
Amidohydrolase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SBT7_9BACT
Imidazolonepropionase-like amidohydrolase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
amidohydrolase
13_1_40cm_scaffold_278_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

7584..8921
DNA (1338bp) protein (446aa)
Amidohydrolase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SBT6_9BACT
Imidazolonepropionase-like amidohydrolase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Imidazolonepropionase-like amidohydrolase
13_1_40cm_scaffold_278_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(8983..10218)
DNA (1236bp) protein (412aa)
gtfE; glycosyl transferase (EC:2.4.1.-) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
gtfE; glycosyl transferase family protein (EC:2.4.1.-)
SorF n=1 Tax=Sorangium cellulosum RepID=E5FNE9_SORCE
13_1_40cm_scaffold_278_9
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

10234..11526
DNA (1293bp) protein (431aa)
Major facilitator superfamily MFS_1 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AC6_SOLUE
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABJ81996.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Soliba
13_1_40cm_scaffold_278_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(11537..12682)
DNA (1146bp) protein (382aa)
molybdate ABC transporter ATPase (EC:3.6.3.29); K02017 molybdate transport system ATP-binding protein [EC:3.6.3.29] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Molybdate ABC transporter, ATP-binding protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09DL4_STIAD
molybdate ABC transporter ATPase
13_1_40cm_scaffold_278_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(12661..13332)
DNA (672bp) protein (224aa)
Molybdate ABC transporter, inner membrane subunit n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VD3_SOLUE
modB; molybdate ABC transporter permease protein; K02018 molybdate transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
molybdate ABC transporter inner membrane subunit
13_1_40cm_scaffold_278_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(13421..14215)
DNA (795bp) protein (265aa)
Molybdate transport system substrate-binding protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5ST41_9BACT
molybdenum ABC transporter periplasmic molybdate-binding protein; K02020 molybdate transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
modA; molybdenum ABC transporter periplasmic molybdate-binding protein
13_1_40cm_scaffold_278_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

14380..14844
DNA (465bp) protein (155aa)
Molybdenum-pterin binding protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRF0_KORVE
molybdenum-pterin binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
molybdenum-pterin-binding protein
13_1_40cm_scaffold_278_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

15032..15406
DNA (375bp) protein (125aa)
phosphoribosyl-AMP cyclohydrolase; K11755 phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase [EC:3.6.1.31 3.5.4.19] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
phosphoribosyl-AMP cyclohydrolase; K11755 phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase [EC:3.6.1.31 3.5.4.19] id=12554365 bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphoribosyl-AMP cyclohydrolase
13_1_40cm_scaffold_278_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

15451..16338
DNA (888bp) protein (296aa)
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17); K00765 ATP phosphoribosyltransferase [EC:2.4.2.17] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17); K00765 ATP phosphoribosyltransferase [EC:2.4.2.17] id=12554364 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17)
13_1_40cm_scaffold_278_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

16647..17897
DNA (1251bp) protein (417aa)
hisD; histidinol dehydrogenase (EC:1.1.1.23); K00013 histidinol dehydrogenase [EC:1.1.1.23] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
histidinol dehydrogenase (EC:1.1.1.23)
histidinol dehydrogenase id=12554363 bin=CNBR_ACIDO species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_278_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

17894..18937
DNA (1044bp) protein (348aa)
hisC; histidinol-phosphate transaminase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Histidinol-phosphate aminotransferase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKB5_KORVE
histidinol phosphate aminotransferase
13_1_40cm_scaffold_278_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

18922..19509
DNA (588bp) protein (196aa)
imidazoleglycerol-phosphate dehydratase; K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] id=12554362 bin=CNBR_ACIDO species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
imidazoleglycerol-phosphate dehydratase
13_1_40cm_scaffold_278_19
unknown

Not on your lists

comp(19401..19916)
DNA (516bp) protein (172aa)

This feature has no annotations

13_1_40cm_scaffold_278_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

20259..20981
DNA (723bp) protein (241aa)
hisF; imidazole glycerol phosphate synthase subunit HisF; K02500 cyclase [EC:4.1.3.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
imidazole glycerol phosphate synthase subunit HisF; K02500 cyclase [EC:4.1.3.-] id=12554360 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hisF; imidazole glycerol phosphate synthase subunit HisF
13_1_40cm_scaffold_278_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

21118..21804
DNA (687bp) protein (229aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] Tax=RIF
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] id=12554359 bin=CNBR_ACIDO species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
13_1_40cm_scaffold_278_22
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

21860..22624
DNA (765bp) protein (255aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
13_1_40cm_scaffold_278_23
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

22653..25445
DNA (2793bp) protein (931aa)
Glycosyl transferase, family 2 n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LP64_SYNFM
glycosyl transferase family 2 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
glycosyl transferase family protein
Displaying 23 items

View Taxonomy