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13_1_40cm_scaffold_2036

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Displaying items 1-30 of 53 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2036_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(67..1308)
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Balneola vulgaris RepID=UPI000370FF24
peptidase M20
Peptidase M20 {ECO:0000313|EMBL:AHG91478.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_2036_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

1362..2594
DNA (1233bp) protein (411aa)
leuA3; 2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FMN1_SORC5 id=5224560 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
2-isopropylmalate synthase Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_2036_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2585..4207
DNA (1623bp) protein (541aa)
Uncharacterized protein n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A7Y2_NATTJ
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_scaffold_2036_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

4197..5423
DNA (1227bp) protein (409aa)
Major facilitator family transporter Tax=RBG_16_Gemmatimonadetes_66_8_curated
Membrane protein, major facilitator superfamily id=1867623 bin=GWD2_Nitrospirae-related_57_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
major facilitator superfamily MFS_1
13_1_40cm_scaffold_2036_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

5680..6762
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABL9_GEMAT
peptidase M14 carboxypeptidase A
Peptidase M14 carboxypeptidase A {ECO:0000313|EMBL:AHG92073.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_2036_6
Xanthomonas perforans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6900..7208
DNA (309bp) protein (103aa)
Putative carboxypeptidase {ECO:0000313|EMBL:EGD15838.1}; Flags: Precursor;; TaxID=925776 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" sourc
13_1_40cm_scaffold_2036_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(7299..10481)
DNA (3183bp) protein (1061aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACD2_GEMAT
Uncharacterized protein {ECO:0000313|EMBL:AHG88125.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
13_1_40cm_scaffold_2036_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10552..11775)
DNA (1224bp) protein (408aa)
Amidohydrolase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02DB3_SOLUE
amidohydrolase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
amidohydrolase
13_1_40cm_scaffold_2036_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

11906..12463
DNA (558bp) protein (186aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UT59_ROSS1
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_scaffold_2036_10
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(12518..13477)
DNA (960bp) protein (320aa)
membrane protein n=1 Tax=Pedobacter agri RepID=UPI00029A3969
ankyrin repeat protein Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
OmpA/MotB domain-containing protein
13_1_40cm_scaffold_2036_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(13506..14795)
DNA (1290bp) protein (430aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Putative uncharacterized protein id=3207178 bin=GWC2_Ignavibacteria_56_12 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
hypothetical protein
13_1_40cm_scaffold_2036_12
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(14888..16243)
DNA (1356bp) protein (452aa)
WD-40-like beta propeller repeat-containing protein; K03641 TolB protein Tax=RBG_13_Bathyarchaeota_38_9_curated
WD40-like Beta Propeller id=3409996 bin=GWA2_Ignavibacteria_55_11 species=Bacillus cereus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
WD40-like beta Propeller containing protein
13_1_40cm_scaffold_2036_13
unknown

Not on your lists

16496..16735
DNA (240bp) protein (80aa)

This feature has no annotations

13_1_40cm_scaffold_2036_14
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(17695..18051)
DNA (357bp) protein (119aa)
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
13_1_40cm_scaffold_2036_15
unknown

Not on your lists

comp(18099..18308)
DNA (210bp) protein (70aa)

This feature has no annotations

13_1_40cm_scaffold_2036_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(18292..20328)
DNA (2037bp) protein (679aa)
Carbon starvation protein CstA n=1 Tax=Desmospora sp. 8437 RepID=F5SAM8_9BACL
cstA; carbon starvation protein A; K06200 carbon starvation protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
carbon starvation protein CstA
13_1_40cm_scaffold_2036_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

20357..21247
DNA (891bp) protein (297aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=uncultured bacterium RepID=Q565X5_9BACT
3-oxoacyl-(acyl-carrier-protein) reductase
13_1_40cm_scaffold_2036_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

21327..22004
DNA (678bp) protein (226aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_scaffold_2036_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

22001..23014
DNA (1014bp) protein (338aa)
icd; isocitrate dehydrogenase (EC:1.1.1.42); K00030 isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Isocitrate dehydrogenase (NAD(+)) n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U960_METS4
isocitrate dehydrogenase (NAD(+))
13_1_40cm_scaffold_2036_20
unknown

Not on your lists

22992..23294
DNA (303bp) protein (101aa)

This feature has no annotations

13_1_40cm_scaffold_2036_21
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23282..24688
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HJ83_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKV30453.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirill
hypothetical protein
13_1_40cm_scaffold_2036_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

24685..25563
DNA (879bp) protein (293aa)
Metallophosphoesterase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZR5_RUBXD
metallophosphoesterase Tax=RBG_16_Gemmatimonadetes_66_8_curated
Calcineurin-like phosphoesterase superfamily domain protein
13_1_40cm_scaffold_2036_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

25583..26770
DNA (1188bp) protein (396aa)
gcdH; glutaryl-CoA dehydrogenase (EC:1.3.99.7); K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Glutaryl-CoA dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABA7_GEMAT
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_scaffold_2036_24
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26886..29003
DNA (2118bp) protein (706aa)
TonB-dependent receptor n=1 Tax=Burkholderia cenocepacia (strain MC0-3) RepID=B1K6Y1_BURCC
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ACA94285.1}; TaxID=406425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex
13_1_40cm_scaffold_2036_25
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

29137..29889
DNA (753bp) protein (251aa)
Electron transfer flavoprotein subunit beta n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABA3_GEMAT
etfB; electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
etfB; electron transfer flavoprotein subunit beta
13_1_40cm_scaffold_2036_26
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

29886..30860
DNA (975bp) protein (325aa)
etfA; electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit Tax=GWC2_Gemmatimonadetes_71_10_curated
Electron transfer flavoprotein alpha/beta-subunit
electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit id=24469728 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_1_40cm_scaffold_2036_27
Burkholderia sp. MR1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30853..31122
DNA (270bp) protein (90aa)
Electron-transferring-flavoprotein dehydrogenase {ECO:0000313|EMBL:KIG11100.1}; EC=1.5.5.1 {ECO:0000313|EMBL:KIG11100.1};; TaxID=870478 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholde
Uncharacterized protein (Fragment) n=1 Tax=Petromyzon marinus RepID=S4RU64_PETMA
etf-QO; electrotransfer ubiquinone oxidoreductase
13_1_40cm_scaffold_2036_28

Not on your lists

31161..32435
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MPW0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EQB63050.1}; TaxID=1379698 species="Bacteria.;" source="candidate division Zixibacteria bacterium RBG-1.;"
etfD; electron transferring flavoprotein dehydrogenase
13_1_40cm_scaffold_2036_29
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

32954..33649
DNA (696bp) protein (232aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6E7_9BACT id=5223510 bin=16ft_combo_ws3_JS1 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
diguanylate cyclase Tax=RBG_16_Chloroflexi_63_12_curated
diguanylate cyclase
13_1_40cm_scaffold_2036_30
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(33680..34507)
DNA (828bp) protein (276aa)
Diguanylate cyclase id=4516555 bin=GWC2_Nitrospirae-rel_56_14 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
diguanylate cyclase Tax=GWC2_Nitrospirae_56_14_curated
two-component response regulator modulated diguanylate cyclase
Displaying items 1-30 of 53 in total

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