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13_1_40cm_scaffold_3913

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_3913_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2..1000
DNA (999bp) protein (333aa)
pilB; type IV pilus biogenesis protein PilB; K02652 type IV pilus assembly protein PilB Tax=RBG_16_Gemmatimonadetes_66_8_curated
type II secretion system protein E; K02652 type IV pilus assembly protein PilB id=24445584 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
type IV pilus assembly protein PilB
13_1_40cm_scaffold_3913_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

1017..2159
DNA (1143bp) protein (381aa)
Twitching mobility protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA13_GEMAT
pilT; twitching mobility protein; K02669 twitching motility protein PilT Tax=RBG_16_Gemmatimonadetes_66_8_curated
twitching motility protein
13_1_40cm_scaffold_3913_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2180..3385
DNA (1206bp) protein (402aa)
Type IV pilus assembly protein PilC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA12_GEMAT
pilC; type IV pilus assembly protein PilC; K02653 type IV pilus assembly protein PilC Tax=RBG_16_Gemmatimonadetes_66_8_curated
Type II secretion system F domain-containing protein
13_1_40cm_scaffold_3913_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

3701..5281
DNA (1581bp) protein (527aa)
two-component histidine kinase; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9X0_GEMAT
two-component histidine kinase
13_1_40cm_scaffold_3913_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

5278..6672
DNA (1395bp) protein (465aa)
NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9W9_GEMAT
NtrC family two-component response regulator Tax=GWC2_Gemmatimonadetes_71_10_curated
NtrC family two-component response regulator
13_1_40cm_scaffold_3913_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

6669..7145
DNA (477bp) protein (159aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_3913_7
unknown

Not on your lists

comp(7383..7610)
DNA (228bp) protein (76aa)

This feature has no annotations

13_1_40cm_scaffold_3913_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

7884..8213
DNA (330bp) protein (110aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_3913_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

8217..8957
DNA (741bp) protein (247aa)
glycosyl transferase family protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ribosomal RNA adenine methylase transferase id=12554429 bin=CNBR_ACIDO species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ribosomal RNA adenine methylase transferase
13_1_40cm_scaffold_3913_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

8954..9694
DNA (741bp) protein (247aa)
Glycosyl transferase family 2 n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFI8_9BACT
glycosyltransferase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
glycosyl transferase family 2
13_1_40cm_scaffold_3913_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

9673..11196
DNA (1524bp) protein (508aa)
Uncharacterized protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R3A9_ISOPI
Uncharacterized protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_scaffold_3913_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

11174..12730
DNA (1557bp) protein (519aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UH26_ANASK
transmembrane and TPR repeat-containing protein CG4341-like Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_scaffold_3913_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

12727..14253
DNA (1527bp) protein (509aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JE21_ANAD2
transmembrane and TPR repeat-containing protein CG4341-like Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_scaffold_3913_14
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

14295..15290
DNA (996bp) protein (332aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" s
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF8_GEMAT
two-component histidine kinase
13_1_40cm_scaffold_3913_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

15287..16666
DNA (1380bp) protein (460aa)
Sigma-54-dependent transcriptional response regulator n=2 Tax=Geobacter metallireducens RepID=Q39X21_GEOMG
two component, sigma54 specific, Fis family transcriptional regulator; K07714 two-component system, NtrC family, response regulator AtoC Tax=RBG_16_Gemmatimonadetes_66_8_curated
sigma-54-dependent transcriptional response regulator
13_1_40cm_scaffold_3913_16
unknown

Not on your lists

16802..17245
DNA (444bp) protein (148aa)

This feature has no annotations

13_1_40cm_scaffold_3913_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

17242..17616
DNA (375bp) protein (125aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_3913_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

17604..18548
DNA (945bp) protein (315aa)
Type II secretory pathway component PulJ-like n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LLC9_SYNFM
Type II secretory pathway component PulJ-like protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_3913_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

18580..19758
DNA (1179bp) protein (393aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_3913_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

19888..20865
DNA (978bp) protein (326aa)
Putative type IV pilus assembly protein PilM n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF4_GEMAT
pilM; putative type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
pilM; putative type IV pilus assembly protein PilM
13_1_40cm_scaffold_3913_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

20862..21572
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF3_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_scaffold_3913_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

21815..22153
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF2_GEMAT
hypothetical protein; K02664 type IV pilus assembly protein PilO Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_scaffold_3913_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

22140..22556
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF1_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_scaffold_3913_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

22553..22963
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF0_GEMAT
hypothetical protein; K02666 type IV pilus assembly protein PilQ Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
type II and III secretion system protein
Displaying 24 items

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