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13_1_40cm_scaffold_15536

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Displaying 11 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_15536_1
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(1..174)
DNA (174bp) protein (58aa)
Prefoldin subunit beta n=1 Tax=Thermoplasmatales archaeon BRNA1 RepID=M4YU40_9EURY
Prefoldin beta subunit (GimC beta subunit) Tax=RBG_16_Euryarchaeota_68_13_curated
pfdB; prefoldin subunit beta
13_1_40cm_scaffold_15536_2
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(171..404)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7TFV6_9EURY
hypothetical protein Tax=RBG_16_Euryarchaeota_68_13_curated
hypothetical protein
13_1_40cm_scaffold_15536_3
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(407..541)
DNA (135bp) protein (45aa)
rpoP; DNA-directed RNA polymerase subunit P (EC:2.7.7.6) Tax=RBG_16_Euryarchaeota_68_13_curated
rpoP; DNA-directed RNA polymerase subunit P (EC:2.7.7.6)
DNA-directed RNA polymerase subunit P n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T548_9EURY
13_1_40cm_scaffold_15536_4
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(543..830)
DNA (288bp) protein (96aa)
50S ribosomal protein L37Ae n=1 Tax=Thermococcus onnurineus (strain NA1) RepID=RL37A_THEON
50S ribosomal protein L37Ae Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
rpl37ae; 50S ribosomal protein L37Ae
13_1_40cm_scaffold_15536_5
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(839..1618)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037C197A
3' exoribonuclease; K12589 exosome complex component RRP42 Tax=RBG_16_Euryarchaeota_68_13_curated
3' exoribonuclease
13_1_40cm_scaffold_15536_6
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(1618..2454)
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037D8B2C
exosome complex exonuclease Rrp41 Tax=RBG_16_Euryarchaeota_68_13_curated
exosome complex exonuclease Rrp41
13_1_40cm_scaffold_15536_7
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(2468..3166)
DNA (699bp) protein (233aa)
Exosome complex component Rrp4 n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T5L6_9EURY
RNA-binding protein Rrp4 (containing S1 domain and KH domain) Tax=RBG_16_Euryarchaeota_67_27_curated
exosome complex RNA-binding protein Rrp4
13_1_40cm_scaffold_15536_8
unknown

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comp(3251..3481)
DNA (231bp) protein (77aa)

This feature has no annotations

13_1_40cm_scaffold_15536_9
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(3525..3953)
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IEK0_ACIB4
ribosome maturation protein SBDS-like protein; K14574 ribosome maturation protein SDO1 Tax=RBG_16_Euryarchaeota_68_13_curated
ribosome maturation protein SBDS-like protein
13_1_40cm_scaffold_15536_10
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(3947..4222)
DNA (276bp) protein (92aa)
Predicted exosome subunit n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Q8TYB8_METKA
Suspect SCG annotation. See neighboring gene [13_1_40cm_scaffold_15536_9].
rRNA metabolism protein, SBDS family Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RNA-associated protein
13_1_40cm_scaffold_15536_11
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(4231..4902)
DNA (672bp) protein (224aa)
proteasome subunit alpha (EC:3.4.25.1) Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
proteasome subunit alpha (EC:3.4.25.1)
Proteasome subunit alpha n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T884_9EURY
Displaying 11 items

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