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13_1_40cm_2_scaffold_1044

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1044_1
unknown

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1..126
DNA (126bp) protein (42aa)

This feature has no annotations

13_1_40cm_2_scaffold_1044_2
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

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206..736
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Aeromonas media WS RepID=K2I8D5_AERME
hypothetical protein Tax=RBG_16_Zixibacteria_48_11_curated
hypothetical protein
13_1_40cm_2_scaffold_1044_3
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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819..1439
DNA (621bp) protein (207aa)
psmB2; proteasome subunit beta (EC:3.4.25.1) Tax=RBG_13_Bathyarchaeota_38_9_curated
proteasome beta subunit (EC:3.4.25.1)
Proteasome subunit beta n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8N0_9ARCH
13_1_40cm_2_scaffold_1044_4
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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1491..2120
DNA (630bp) protein (210aa)
Translin n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RY03_THEPD
Translin family protein; K07477 translin Tax=RBG_13_Bathyarchaeota_38_9_curated
translin family protein
13_1_40cm_2_scaffold_1044_5
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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2159..2830
DNA (672bp) protein (224aa)
rfk; riboflavin kinase (EC:2.7.1.161) Tax=RBG_13_Bathyarchaeota_38_9_curated
ribK; riboflavin kinase (EC:2.7.1.161)
hypothetical protein n=1 Tax=Aigarchaeota archaeon JGI 0000001-H6 RepID=UPI000376E1D2
13_1_40cm_2_scaffold_1044_6
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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comp(2827..3285)
DNA (459bp) protein (153aa)
taqD; glycerol-3-phosphate cytidylyltransferase (EC:2.7.7.39); K14656 FAD synthetase Tax=RBG_16_Bathyarchaeota_48_13_curated
glycerol-3-phosphate cytidylyltransferase (EC:2.7.7.39)
Glycerol-3-phosphate cytidylyltransferase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8M8_9ARCH
13_1_40cm_2_scaffold_1044_7
unknown

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comp(3343..3909)
DNA (567bp) protein (189aa)

This feature has no annotations

13_1_40cm_2_scaffold_1044_8
Pyrobaculum oguniense, Pyrobaculum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

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comp(3978..4235)
DNA (258bp) protein (86aa)
Cytidyltransferase-related domain protein n=1 Tax=Pyrobaculum oguniense (strain DSM 13380 / JCM 10595 / TE7) RepID=H6QBR2_PYROT
cytidyltransferase
Cytidyltransferase-related domain protein {ECO:0000313|EMBL:AFA40555.1}; TaxID=698757 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum.;" source="Pyrobacul
13_1_40cm_2_scaffold_1044_9
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(4232..5008)
DNA (777bp) protein (259aa)
diphthine synthase (EC:2.1.1.98) Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Diphthine synthase n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J2X8_HALJB
diphthine synthase
13_1_40cm_2_scaffold_1044_10
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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comp(5055..7097)
DNA (2043bp) protein (681aa)
RecA superfamily ATPase implicated in signal transduction n=1 Tax=Thermococcus sibiricus (strain MM 739 / DSM 12597) RepID=C6A5C5_THESM
hypothetical protein containing KaiC-domain Tax=RBG_13_Bathyarchaeota_38_9_curated
hypothetical protein containing KaiC-domain
13_1_40cm_2_scaffold_1044_11
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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7747..8247
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI0003643B83
Strain A contig00006, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ55671.1}; TaxID=277 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiotherm
hypothetical protein
13_1_40cm_2_scaffold_1044_12
RBG_16_Archaea_50_20_curated, Archaea

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8536..9081
DNA (546bp) protein (182aa)
Putative HEAT repeat-containing PBS lyase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKC1_NITGG
HEAT repeat-containing PBS lyase Tax=RBG_16_Archaea_50_20_curated
putative HEAT repeat-containing PBS lyase
13_1_40cm_2_scaffold_1044_13
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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9140..10201
DNA (1062bp) protein (354aa)
hypothetical protein; K15429 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RBG_13_Bathyarchaeota_46_16b_curated
Met-10+ like protein n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AF65_PYRYC
hypothetical protein
13_1_40cm_2_scaffold_1044_14
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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comp(10198..10617)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GY02_METFV
hypothetical protein Tax=RBG_16_Bathyarchaeota_48_13_curated
hypothetical protein
13_1_40cm_2_scaffold_1044_15
Ignicoccus hospitalis, Ignicoccus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

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10723..10893
DNA (171bp) protein (57aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000255|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000255|HAMAP-Rule:M
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=PIMT_IGNH4
protein-L-isoaspartate O-methyltransferase
13_1_40cm_2_scaffold_1044_16
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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10921..11376
DNA (456bp) protein (152aa)
Protein-L-isoaspartate O-methyltransferase 1; EC=2.1.1.77;; L-isoaspartyl protein carboxyl methyltransferase 1; Protein L-isoaspartyl methyltransferase 1; Protein-beta-aspartate methyltransferase 1; S
Protein-L-isoaspartate O-methyltransferase 1 n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=PIMT1_METAC
pcm-1; protein-L-isoaspartate O-methyltransferase
13_1_40cm_2_scaffold_1044_17
RBG_16_Archaea_50_20_curated, Archaea

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comp(11373..12410)
DNA (1038bp) protein (346aa)
flap endonuclease-1; K04799 flap endonuclease-1 [EC:3.-.-.-] Tax=RBG_16_Archaea_50_20_curated
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI00037087F5
endonuclease
13_1_40cm_2_scaffold_1044_18
Candidatus Korarchaeum cryptofilum, Candidatus Korarchaeum, Korarchaeota, Archaea

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comp(12439..13209)
DNA (771bp) protein (257aa)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L453_KORCO
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase {ECO:0000313|EMBL:ACB07232.1}; TaxID=374847 species="Archaea; Korarchaeota; Candidatus Korarchaeum.;" source="Korarchaeum cryptof
13_1_40cm_2_scaffold_1044_19
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

Not on your lists

13271..14152
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z8I7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCQ89344.1}; TaxID=1266370 species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina.;" source="Nitrospina gracilis (strain 3/211
adenine nucleotide alpha hydrolase TIGR00268 family
13_1_40cm_2_scaffold_1044_20
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

14356..14955
DNA (600bp) protein (200aa)
proteasome subunit beta (EC:3.4.25.1); K03433 proteasome beta subunit [EC:3.4.25.1] Tax=RBG_16_Archaea_50_20_curated
psmB2; proteasome, subunit beta (EC:3.4.25.1)
Proteasome subunit beta n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GY12_METFV
13_1_40cm_2_scaffold_1044_21
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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15022..16920
DNA (1899bp) protein (633aa)
Putative uncharacterized protein PH1404 n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O50112_PYRHO
kh-domain/beta-lactamase-domain protein; K07041 Tax=RBG_13_Bathyarchaeota_38_9_curated
mRNA 3'-end processing factor
13_1_40cm_2_scaffold_1044_22
RBG_16_Archaea_50_20_curated, Archaea

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comp(16933..17325)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=uncultured archaeon RepID=G3C9I1_9ARCH
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
Protein of unknown function (DUF552)
13_1_40cm_2_scaffold_1044_23
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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comp(17353..17640)
DNA (288bp) protein (96aa)
RNA-binding protein, containing PUA domain protein n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWT6_METFV
putative RNA-binding protein; K07575 PUA domain protein Tax=RBG_16_Bathyarchaeota_48_13_curated
RNA-binding protein, containing pua domain-containing protein
13_1_40cm_2_scaffold_1044_24
unknown

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18426..21044
DNA (2619bp) protein (873aa)

This feature has no annotations

13_1_40cm_2_scaffold_1044_25
RBG_16_Archaea_50_20_curated, Archaea

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21231..23105
DNA (1875bp) protein (625aa)
glycyl-tRNA synthetase; K01880 glycyl-tRNA synthetase [EC:6.1.1.14] Tax=RBG_16_Archaea_50_20_curated
Glycine--tRNA ligase n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0ECJ1_PYRF1 rbh
glycyl-tRNA synthetase rbh
13_1_40cm_2_scaffold_1044_26
RBG_16_Archaea_50_20_curated, Archaea

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23173..23832
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8B5_9ARCH
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_2_scaffold_1044_27
RBG_16_Archaea_50_20_curated, Archaea

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23840..24409
DNA (570bp) protein (190aa)
endA1; tRNA-splicing endonuclease (EC:3.1.27.9) Tax=RBG_16_Archaea_50_20_curated
endA2; tRNA-splicing endonuclease (EC:4.6.1.16)
tRNA intron endonuclease n=1 Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KJR1_9ARCH
13_1_40cm_2_scaffold_1044_28
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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comp(24419..24754)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI000380515C
hypothetical protein
Tax=RBG_16_Thaumarchaeota_49_8_curated
13_1_40cm_2_scaffold_1044_29
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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24918..25421
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Methanothermobacter thermautotrophicus CaT2 RepID=T2GJY7_METTF
amino acid-binding ACT domain-containing protein; K07103 Tax=RBG_13_Bathyarchaeota_38_9_curated
regulatory protein
13_1_40cm_2_scaffold_1044_30
RBG_16_Archaea_50_20_curated, Archaea

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25503..26249
DNA (747bp) protein (249aa)
Tax=RBG_16_Archaea_50_20_curated
Displaying items 1-30 of 46 in total

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