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13_1_40cm_2_scaffold_10096

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_10096_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(3..158)
DNA (156bp) protein (52aa)
phosphomethylpyrimidine kinase; K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
thiD; bifunctional hydroxy-methylpyrimidine kinase/hydroxy-phosphomethylpyrimidine kinase (EC:2.7.4.7 2.7.1.49)
Bifunctional: hydroxy-methylpyrimidine kinase (HMP kinase) hydroxy-phosphomethylpyrimidine kinase (HMP-P kinase) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLB9_9BACT
13_1_40cm_2_scaffold_10096_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

201..773
DNA (573bp) protein (191aa)
BioY protein n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SFV2_9BACT
BioY protein; K03523 putative biotin biosynthesis protein BioY Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
BioY protein
13_1_40cm_2_scaffold_10096_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(835..1338)
DNA (504bp) protein (168aa)
type 11 methyltransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
type 11 methyltransferase id=12556565 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
methyltransferase type 11
13_1_40cm_2_scaffold_10096_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1298..2986)
DNA (1689bp) protein (563aa)
aspA; aspartate ammonia-lyase (EC:4.3.1.1); K01744 aspartate ammonia-lyase [EC:4.3.1.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Fumarate hydratase class II id=3653783 bin=GWF2_Geobacter_54_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
aspA; aspartate ammonia-lyase
13_1_40cm_2_scaffold_10096_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3029..3397
DNA (369bp) protein (123aa)
fumarase (EC:4.2.1.2); K01676 fumarate hydratase, class I [EC:4.2.1.2] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
fumarase (EC:4.2.1.2)
Fumarase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VE5_SOLUE
13_1_40cm_2_scaffold_10096_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

3448..4524
DNA (1077bp) protein (359aa)
fumarase (EC:4.2.1.2); K01676 fumarate hydratase, class I [EC:4.2.1.2] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
fumarase, class I, homodimeric (EC:4.2.1.2)
Fumarase, class I, homodimeric n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EYR2_9BACT
13_1_40cm_2_scaffold_10096_7
Geobacillus sp. Y4.1MC1, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4655..4999
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Geobacillus thermoglucosidans TNO-09.020 RepID=I0U7C3_GEOTM
Synaptonemal complex 1
Synaptonemal complex 1 {ECO:0000313|EMBL:ADP75186.1}; TaxID=581103 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. (strain Y4.1MC1).;"
13_1_40cm_2_scaffold_10096_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(4971..5861)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Desulfovibrio africanus PCS RepID=M5Q0P4_DESAF
protein involved in formate dehydrogenase formation; K02380 FdhE protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
formate dehydrogenase accessory protein
13_1_40cm_2_scaffold_10096_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

5882..6211
DNA (330bp) protein (110aa)
iron-sulfur cluster assembly accessory protein; K15724 iron-sulfur cluster insertion protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
iron-sulfur cluster assembly accessory protein; K15724 iron-sulfur cluster insertion protein id=12556563 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
iron-sulfur cluster assembly accessory protein
13_1_40cm_2_scaffold_10096_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

6287..7243
DNA (957bp) protein (319aa)
Fe2+/Zn2+ uptake regulation protein; K03711 Fur family transcriptional regulator, ferric uptake regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Ferric uptake regulator, Fur family id=12556562 bin=CNBR_ACIDO species=Desulfovibrio hydrothermalis genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ferric uptake regulation protein
13_1_40cm_2_scaffold_10096_11
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

7240..8091
DNA (852bp) protein (284aa)
phP-like protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
phP-like protein id=12556561 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phP-like protein
13_1_40cm_2_scaffold_10096_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(8031..8462)
DNA (432bp) protein (144aa)
Type 12 methyltransferase n=1 Tax=Desulfovibrio sp. X2 RepID=S7TL85_9DELT
tehB; SAM-dependent methyltransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
type 12 methyltransferase
13_1_40cm_2_scaffold_10096_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

8571..9011
DNA (441bp) protein (147aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_2_scaffold_10096_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

9008..9724
DNA (717bp) protein (239aa)
ABC transporter; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
ABC transporter, ATP-binding protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1Q6C0_BREDI
proV; glycine betaine/proline porter
13_1_40cm_2_scaffold_10096_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

9751..10206
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Pseudomonas fragi RepID=UPI0003715962
atpases of the aaa+ class Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
putative uncharacterized protein
13_1_40cm_2_scaffold_10096_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

10422..10622
DNA (201bp) protein (67aa)
cold-shock DNA-binding protein family; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
cold-shock DNA-binding protein family; K03704 cold shock protein (beta-ribbon, CspA family) id=12556558 bin=CNBR_ACIDO species=Planctomyces brasiliensis genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cold-shock DNA-binding protein family
13_1_40cm_2_scaffold_10096_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

10660..11280
DNA (621bp) protein (207aa)
hydrolase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
Putative uncharacterized protein id=2308611 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hydrolase
13_1_40cm_2_scaffold_10096_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(11597..11803)
DNA (207bp) protein (69aa)
cold-shock DNA-binding protein family; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
cold-shock DNA-binding protein family; K03704 cold shock protein (beta-ribbon, CspA family) id=12556558 bin=CNBR_ACIDO species=Planctomyces brasiliensis genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cold-shock DNA-binding protein family
13_1_40cm_2_scaffold_10096_19
unknown

Not on your lists

12014..12262
DNA (249bp) protein (83aa)

This feature has no annotations

13_1_40cm_2_scaffold_10096_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

12423..13016
DNA (594bp) protein (198aa)
metal dependent phosphohydrolase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
4-diphosphocytidyl-2C-methyl-D-erythritolsynthas E id=2013955 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
metal-dependent phosphohydrolase HD sub domain-containing protein
13_1_40cm_2_scaffold_10096_21
unknown

Not on your lists

comp(12964..13203)
DNA (240bp) protein (80aa)

This feature has no annotations

13_1_40cm_2_scaffold_10096_22
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

13241..14059
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZB19_TERRK
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_2_scaffold_10096_23
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14153..15847
DNA (1695bp) protein (565aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI00035DC4BE
Uncharacterized protein {ECO:0000313|EMBL:EYF06377.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondrom
hypothetical protein
13_1_40cm_2_scaffold_10096_24
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

16471..17496
DNA (1026bp) protein (342aa)
Histone deacetylase superfamily n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CY53_9BACT
histone deacetylase superfamily protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
histone deacetylase superfamily protein
13_1_40cm_2_scaffold_10096_25
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

17509..18342
DNA (834bp) protein (278aa)
ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
ATP-dependent DNA ligase-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XX07_RAMTT
ATP-dependent DNA ligase
Displaying 25 items

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