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13_1_40cm_2_scaffold_1238

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1238_1
unknown

Not on your lists

comp(1..174)
DNA (174bp) protein (58aa)

This feature has no annotations

13_1_40cm_2_scaffold_1238_2
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

262..873
DNA (612bp) protein (204aa)
hypothetical protein Tax=RBG_16_Gamma2_60_9_curated
hypothetical protein id=24594421 bin=RBG_19FT_COMBO_GAL15_69_19 species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_2_scaffold_1238_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

884..2725
DNA (1842bp) protein (614aa)
putative ABC transporter ATP-binding/permease protein; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative ABC transporter ATP-binding/permease protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE60_GEMAT id=5223291 bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade rbh
ABC transporter transmembrane region
13_1_40cm_2_scaffold_1238_4
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2722..4029)
DNA (1308bp) protein (436aa)
dihydropyrimidine dehydrogenase (EC:1.3.1.1 1.3.1.2)
Dihydropyrimidine dehydrogenase [NADP+] n=1 Tax=uncultured bacterium A1Q1_fos_18 RepID=L7VVQ1_9BACT rbh
yeiA; dihydroorotate dehydrogenase family protein Tax=RBG_16_Deltaproteobacteria_71_12_curated
13_1_40cm_2_scaffold_1238_5
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4022..5263)
DNA (1242bp) protein (414aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14] Tax=RBG_16_Deltaproteobacteria_71_12_curated
FAD-dependent pyridine nucleotide-disulfide oxidoreductase id=2981896 bin=GWF2_Ignavibacteria_35_20 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria rbh
oxidoreductase
13_1_40cm_2_scaffold_1238_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5256..6758)
DNA (1503bp) protein (501aa)
nitrate reductase id=24509602 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
nitrate reductase Tax=RBG_16_RIF_WS3X_71_46_curated
nitrate reductase
13_1_40cm_2_scaffold_1238_7
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(6755..8041)
DNA (1287bp) protein (429aa)
putative aminotransferase; K00823 4-aminobutyrate aminotransferase [EC:2.6.1.19] Tax=RBG_16_Zixibacteria_53_22_curated
Aminotransferase n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FRM2_STIAD id=5225712 bin=16ft_combo_ws3_JS1 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
alanine--glyoxylate transaminase
13_1_40cm_2_scaffold_1238_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(8041..9429)
DNA (1389bp) protein (463aa)
Dihydropyrimidinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKX9_9BACT rbh
Dihydropyrimidinase {ECO:0000313|EMBL:EEF59473.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedospha
dihydropyrimidinase
13_1_40cm_2_scaffold_1238_9
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(9473..10348)
DNA (876bp) protein (292aa)
hypothetical protein; K12251 N-carbamoylputrescine amidase [EC:3.5.1.53] Tax=RBG_16_Acidobacteria_68_9_curated
B-alanine synthase n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q097R1_STIAD
beta-alanine synthase
13_1_40cm_2_scaffold_1238_10
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(10342..11694)
DNA (1353bp) protein (451aa)
mmsA; methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27); K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] Tax=RBG_16_Ac
mmsA; methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27)
methylmalonate-semialdehyde dehydrogenase id=24563983 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_1_40cm_2_scaffold_1238_11
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11725..13005)
DNA (1281bp) protein (427aa)
isocitrate lyase (EC:4.1.3.1)
Isocitrate lyase {ECO:0000313|EMBL:ADU51871.1}; EC=4.1.3.1 {ECO:0000313|EMBL:ADU51871.1};; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Se
Isocitrate lyase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SHZ1_THEM7
13_1_40cm_2_scaffold_1238_12
R_Deltaproteobacteria_44_53, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13010..13495)
DNA (486bp) protein (162aa)
malate synthase (EC:2.3.3.9); K01638 malate synthase [EC:2.3.3.9] Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_53_curated
malate synthase (EC:2.3.3.9)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000382ADD8
13_1_40cm_2_scaffold_1238_13
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(13479..14525)
DNA (1047bp) protein (349aa)
malate synthase (EC:2.3.3.9)
Malate synthase {ECO:0000256|RuleBase:RU000555}; EC=2.3.3.9 {ECO:0000256|RuleBase:RU000555};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus S
Malate synthase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q022L4_SOLUE
13_1_40cm_2_scaffold_1238_14
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

14867..17023
DNA (2157bp) protein (719aa)
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase protein Tax=RBG_16_RIF_CHLX_72_14_curated
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase protein id=14629629 bin=bin8_Chloro species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin8_Chloro organism_group=Chloroflexi
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase protein
13_1_40cm_2_scaffold_1238_15
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

17020..17475
DNA (456bp) protein (152aa)
(2Fe-2S)-binding protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XJL5_SORCE
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein Tax=RBG_16_RIF_CHLX_70_13_curated
(2Fe-2S)-binding protein
13_1_40cm_2_scaffold_1238_16
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

17463..18263
DNA (801bp) protein (267aa)
FAD-binding molybdopterin dehydrogenase protein Tax=RBG_16_RIF_CHLX_72_14_curated
FAD-binding molybdopterin dehydrogenase protein id=14629627 bin=bin8_Chloro species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin8_Chloro organism_group=Chloroflexi
FAD-binding molybdopterin dehydrogenase protein
13_1_40cm_2_scaffold_1238_17
Desulfococcus oleovorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18283..18906
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZXQ3_DESOH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW67011.1}; TaxID=96561 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source="Desulfococcus
13_1_40cm_2_scaffold_1238_18
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(18717..19919)
DNA (1203bp) protein (401aa)
amidase (EC:3.5.1.87)
Amidase, hydantoinase/carbamoylase family {ECO:0000313|EMBL:ACZ37626.1}; EC=3.5.1.87 {ECO:0000313|EMBL:ACZ37626.1};; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales;
Amidase, hydantoinase/carbamoylase family n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C688_SPHTD rbh
13_1_40cm_2_scaffold_1238_19
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19909..21243)
DNA (1335bp) protein (445aa)
dihydroorotase, multifunctional complex type (EC:3.5.2.5)
Allantoinase {ECO:0000255|HAMAP-Rule:MF_01645}; EC=3.5.2.5 {ECO:0000255|HAMAP-Rule:MF_01645};; Allantoin-utilizing enzyme {ECO:0000255|HAMAP-Rule:MF_01645}; TaxID=266117 species="Bacteria; Actinobacte
Allantoinase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=ALLB_RUBXD
13_1_40cm_2_scaffold_1238_20
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(21252..21647)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TYV0_9CHLR
hypothetical protein Tax=RBG_16_RIF_CHLX_69_14_curated
hypothetical protein
13_1_40cm_2_scaffold_1238_21
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21661..22011
DNA (351bp) protein (117aa)
5-hydroxyisourate hydrolase {ECO:0000256|RuleBase:RU361270}; Short=HIU hydrolase {ECO:0000256|RuleBase:RU361270};; Short=HIUHase {ECO:0000256|RuleBase:RU361270};; EC=3.5.2.17 {ECO:0000256|RuleBase:RU3
hypothetical protein n=1 Tax=Arthrobacter sp. 131MFCol6.1 RepID=UPI00036C9EA5
transthyretin
13_1_40cm_2_scaffold_1238_22
Rhizopus microsporus, Rhizopus, Mucorales, Fungi

Not on your lists

21987..22445
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) RepID=F4P8Q5_BATDJ
Uncharacterized protein {ECO:0000313|EMBL:CEI97075.1}; TaxID=58291 species="Eukaryota; Fungi; Fungi incertae sedis; Early diverging fungal lineages; Mucoromycotina; Mucorales; Mucorineae; Rhizopodacea
OHCU decarboxylase
13_1_40cm_2_scaffold_1238_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

22445..22759
DNA (315bp) protein (105aa)
Uncharacterized protein Tax=RBG_16_RIF_WS3X_71_46_curated
13_1_40cm_2_scaffold_1238_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

22759..24156
DNA (1398bp) protein (466aa)
Amidase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C792_SPHTD id=5225656 bin=16ft_combo_ws3_JS1 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
amidase Tax=RBG_16_RIF_WS3X_71_46_curated
amidase
13_1_40cm_2_scaffold_1238_25
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

24160..24675
DNA (516bp) protein (172aa)
TIGR03546 family protein n=1 Tax=Idiomarina sp. A28L RepID=F7RYA6_9GAMM
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_2_scaffold_1238_26
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

24672..26438
DNA (1767bp) protein (589aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Putative uncharacterized protein id=2210086 bin=GWB2_Elusimicrobium_63_22 species=Planctomyces brasiliensis genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
hypothetical protein
13_1_40cm_2_scaffold_1238_27
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

26481..27017
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8T7R7_9GAMM
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_13_Acidobacteria_68_16_curated
RNA polymerase sigma factor, sigma-70 family
13_1_40cm_2_scaffold_1238_28
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

27014..27994
DNA (981bp) protein (327aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Putative uncharacterized protein id=4427991 bin=GWC2_Ignavibacteria_56_12 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
hypothetical protein
13_1_40cm_2_scaffold_1238_29
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

28071..29144
DNA (1074bp) protein (358aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_2_scaffold_1238_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29152..29763)
DNA (612bp) protein (204aa)
S23 ribosomal protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T701_NIAKG
S23 ribosomal protein
S23 ribosomal protein {ECO:0000313|EMBL:AEV99022.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (st
Displaying items 1-30 of 44 in total

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