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13_1_40cm_2_scaffold_13058

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_13058_1
unknown

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1..714
DNA (714bp) protein (238aa)

This feature has no annotations

13_1_40cm_2_scaffold_13058_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(781..2049)
DNA (1269bp) protein (423aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Exported protein id=3634141 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_13058_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2013..2291)
DNA (279bp) protein (93aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Exported protein id=3634141 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_13058_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2288..3676)
DNA (1389bp) protein (463aa)
two component sigma54 specific Fis family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Response regulator id=4232767 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Fis family transcriptional regulator
13_1_40cm_2_scaffold_13058_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3673..3903)
DNA (231bp) protein (77aa)
peptidase S1C, Do; K01362 [EC:3.4.21.-] Tax=GWA2_Rokubacteria_73_35_curated
Protease Do id=4681947 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_13058_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3941..5002)
DNA (1062bp) protein (354aa)
degQ; protease degQ (EC:3.4.21.-); K04772 serine protease DegQ [EC:3.4.21.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Protease Do id=4681947 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
degQ; periplasmic trypsin-like serine protease lipoprotein DegQ
13_1_40cm_2_scaffold_13058_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5071..6480)
DNA (1410bp) protein (470aa)
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tRNA(Ile)-lysidine synthase id=4681946 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA(Ile)-lysidine synthetase
13_1_40cm_2_scaffold_13058_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6446..7081)
DNA (636bp) protein (212aa)
moaDE; molybdopterin converting factor, subunits 1/2; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Molybdopterin synthase subunit MoaD / molybdopterin synthase subunit MoaE id=4232764 bin=GWC2_Methylomirabilis_70_16 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
MoaD family protein
13_1_40cm_2_scaffold_13058_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7102..7428)
DNA (327bp) protein (109aa)
Iron-binding protein IscA (Iron-sulfur cluster assembly protein) id=4681944 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein)
13_1_40cm_2_scaffold_13058_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7469..8188)
DNA (720bp) protein (240aa)
short chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GTP cyclohydrolase I id=4681943 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase
13_1_40cm_2_scaffold_13058_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8185..8766)
DNA (582bp) protein (194aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
folE; GTP cyclohydrolase I (EC:3.5.4.16) id=14626369 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
GTP cyclohydrolase (EC:3.5.4.16)
13_1_40cm_2_scaffold_13058_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8763..9167)
DNA (405bp) protein (135aa)
pts; 6-pyruvoyl-tetrahydropterin synthase (EC:4.2.3.12); K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
6-carboxy-5,6,7,8-tetrahydropterin synthase id=4534446 bin=GWF2_Methylomirabilis_70_14 species=Gracilibacillus halophilus genus=Gracilibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_13058_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9922..10659)
DNA (738bp) protein (246aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase, group 1 id=4681940 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_40cm_2_scaffold_13058_14
unknown

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10660..10839
DNA (180bp) protein (60aa)

This feature has no annotations

13_1_40cm_2_scaffold_13058_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(10952..11740)
DNA (789bp) protein (263aa)
enoyl-CoA hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Enoyl-CoA hydratase/isomerase id=4534449 bin=GWF2_Methylomirabilis_70_14 species=Mycobacterium tusciae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enoyl-CoA hydratase
13_1_40cm_2_scaffold_13058_16
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11917..13347
DNA (1431bp) protein (477aa)
bilirubin oxidase (EC:1.3.3.5)
Bilirubin oxidase {ECO:0000313|EMBL:ACB32344.1}; EC=1.3.3.5 {ECO:0000313|EMBL:ACB32344.1};; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Lept
Bilirubin oxidase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y5Z7_LEPCP
13_1_40cm_2_scaffold_13058_17
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13373..14002
DNA (630bp) protein (210aa)
Electron transport protein SCO1/SenC n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3ISK3_9GAMM
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:EGW22373.1}; Flags: Precursor;; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloba
hypothetical protein
13_1_40cm_2_scaffold_13058_18
R_Betaproteobacteria_61_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14004..15053
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Longispora albida RepID=UPI000371E4BA
hypothetical protein Tax=RifCSPlowO2_12_Betaproteobacteria_61_14_curated
hypothetical protein
13_1_40cm_2_scaffold_13058_19
unknown

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comp(15069..15488)
DNA (420bp) protein (140aa)

This feature has no annotations

13_1_40cm_2_scaffold_13058_20
RBG_16_Desulfobacca_60_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15649..16308
DNA (660bp) protein (220aa)
asparagine synthase, glutamine-hydrolyzing (EC:6.3.5.4)
hypothetical protein n=1 Tax=Spirulina subsalsa RepID=UPI0002E4E77D
asparagine synthase Tax=RBG_16_Desulfobacca_60_12_curated
Displaying 20 items

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