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13_1_40cm_2_scaffold_170

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_170_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1..819)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P851_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_2_scaffold_170_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

873..1619
DNA (747bp) protein (249aa)
lpxH; UDP-2,3-diacylglucosamine hydrolase (EC:3.6.1.-); K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] Tax=RBG_16_Gemmatimonadetes_66_8_curated
metallophosphoesterase; K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] id=7200380 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
Calcineurin-like phosphoesterase superfamily domain protein
13_1_40cm_2_scaffold_170_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(1591..2385)
DNA (795bp) protein (265aa)
glutamate racemase; K01776 glutamate racemase [EC:5.1.1.3] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Glutamate racemase
Glutamate racemase id=4937759 bin=GWC2_Geobacteraceae_55_20 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
13_1_40cm_2_scaffold_170_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2378..2875)
DNA (498bp) protein (166aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_2_scaffold_170_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2875..3663)
DNA (789bp) protein (263aa)
diacylglycerol kinase catalytic subunit; K07029 Tax=GWC2_Gemmatimonadetes_71_10_curated
Diacylglycerol kinase catalytic region id=2983915 bin=GWF1_Spirochaetes_51_8 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
diacylglycerol kinase catalytic subunit
13_1_40cm_2_scaffold_170_6
unknown

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comp(3827..4171)
DNA (345bp) protein (115aa)

This feature has no annotations

13_1_40cm_2_scaffold_170_7
unknown

Not on your lists

comp(4247..4600)
DNA (354bp) protein (118aa)

This feature has no annotations

13_1_40cm_2_scaffold_170_8
unknown

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comp(4683..5027)
DNA (345bp) protein (115aa)

This feature has no annotations

13_1_40cm_2_scaffold_170_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5153..5530)
DNA (378bp) protein (126aa)
Endoribonuclease L-PSP n=1 Tax=Nitratifractor salsuginis (strain DSM 16511 / JCM 12458 / E9I37-1) RepID=E6X0B4_NITSE
endoribonuclease l-psp; K07567 TdcF protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
endoribonuclease l-psp
13_1_40cm_2_scaffold_170_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5530..7215)
DNA (1686bp) protein (562aa)
fhs; formate--tetrahydrofolate ligase (EC:6.3.4.3); K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
fhs; formate--tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE57_GEMAT
13_1_40cm_2_scaffold_170_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7212..7892)
DNA (681bp) protein (227aa)
TatD family hydrolase; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Hydrolase, TatD family n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D0K2_HALOH
hydrolase, TatD family
13_1_40cm_2_scaffold_170_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(7985..9001)
DNA (1017bp) protein (339aa)
Protein translocase subunit SecF n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=SECF_GEMAT
SecF protein
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_170_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(9001..10626)
DNA (1626bp) protein (542aa)
Protein translocase subunit SecD n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=SECD_GEMAT
secD; protein-export membrane protein SecD; K03072 preprotein translocase subunit SecD Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
SecD export membrane protein
13_1_40cm_2_scaffold_170_14
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(10636..11541)
DNA (906bp) protein (302aa)
ribF; riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=379066 species="Bacteria; Gemmatimonad
Riboflavin kinase/FMN adenylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8P1_GEMAT
13_1_40cm_2_scaffold_170_15
RBG_13_Deltaproteobacteria_60_28_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11538..12383)
DNA (846bp) protein (282aa)
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=RBG_13_Deltaproteobacteria_60_28_curated
hypothetical protein n=1 Tax=Actinomadura flavalba RepID=UPI00037CD54A
tRNA pseudouridine synthase B
13_1_40cm_2_scaffold_170_16
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(12398..12754)
DNA (357bp) protein (119aa)
Ribosome-binding factor A n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=RBFA_SYMTH
ribosome-binding factor A
ribosome-binding factor A; K02834 ribosome-binding factor A Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
13_1_40cm_2_scaffold_170_17
RBG_16_RIF05_58_8_curated, RIF5, Bacteria

Not on your lists

comp(12756..13031)
DNA (276bp) protein (92aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01W30_SOLUE
protein of unknown function DUF503; K09764 hypothetical protein Tax=RBG_16_RIF05_58_8_curated
hypothetical protein
13_1_40cm_2_scaffold_170_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13034..15682)
DNA (2649bp) protein (883aa)
Translation initiation factor IF-2 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N8_GEMAT
initiation factor 2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_170_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15710..16009)
DNA (300bp) protein (100aa)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N7_GEMAT
ribosomal protein L7Ae/L30e/S12e/Gadd45
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_2_scaffold_170_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16006..17364)
DNA (1359bp) protein (453aa)
Transcription elongation protein NusA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N6_GEMAT
nusA; transcription elongation protein NusA; K02600 N utilization substance protein A Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
nusA; transcription elongation protein NusA
13_1_40cm_2_scaffold_170_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(17364..17864)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Frankia sp. BMG5.12 RepID=UPI0003764ECE
hypothetical protein; K09748 ribosome maturation factor RimP Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Ribosome maturation factor rimP
13_1_40cm_2_scaffold_170_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(17899..18618)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N4_GEMAT
hypothetical protein; K05810 conserved hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_2_scaffold_170_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18677..19954)
DNA (1278bp) protein (426aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Rhizobium sp. CF142 RepID=J2L3J3_9RHIZ
UDP-N-acetylglucosamine 1-carboxyvinyltransferase Tax=RBG_16_Gemmatimonadetes_66_8_curated
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
13_1_40cm_2_scaffold_170_24
unknown

Not on your lists

20017..21189
DNA (1173bp) protein (391aa)

This feature has no annotations

13_1_40cm_2_scaffold_170_25
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

21189..21602
DNA (414bp) protein (138aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_2_scaffold_170_26
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

21623..22267
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N1_GEMAT
phospholipase C/P1 nuclease
Phospholipase C/P1 nuclease {ECO:0000313|EMBL:AHG90718.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_170_27
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(22466..23896)
DNA (1431bp) protein (477aa)
gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-); K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Gem
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N0_GEMAT
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
13_1_40cm_2_scaffold_170_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(23893..25260)
DNA (1368bp) protein (456aa)
gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_12_FULL_Gem
gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8M9_GEMAT
13_1_40cm_2_scaffold_170_29
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25257..25508)
DNA (252bp) protein (84aa)
gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C (EC:6.3.5.6 6.3.5.7); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLO
13_1_40cm_2_scaffold_170_30
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25505..27778)
DNA (2274bp) protein (758aa)
ATP-dependent DNA helicase (EC:3.6.1.-); K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ATP-dependent DNA helicase PcrA n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CR29_DESK7
ATP-dependent DNA helicase PcrA
Displaying items 1-30 of 41 in total

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