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13_1_40cm_2_scaffold_2364

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_2364_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1..1131
DNA (1131bp) protein (377aa)
recJ; single-stranded-DNA-specific exonuclease (EC:3.1.-.-); K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
recJ; single-stranded-DNA-specific exonuclease (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A6_GEMAT
13_1_40cm_2_scaffold_2364_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

1086..1448
DNA (363bp) protein (121aa)
recJ; single-stranded-DNA-specific exonuclease (EC:3.1.-.-); K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
recJ; single-stranded-DNA-specific exonuclease (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A6_GEMAT
13_1_40cm_2_scaffold_2364_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

1448..1966
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A5_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_2_scaffold_2364_4
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

1963..2442
DNA (480bp) protein (160aa)
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3); K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A4_GEMAT
13_1_40cm_2_scaffold_2364_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

2934..3326
DNA (393bp) protein (131aa)
pta; phosphate acetyltransferase (EC:2.3.1.8); K00625 phosphate acetyltransferase [EC:2.3.1.8] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
pta; phosphate acetyltransferase (EC:2.3.1.8)
Phosphate acetyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A3_GEMAT
13_1_40cm_2_scaffold_2364_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

3323..3682
DNA (360bp) protein (120aa)
Anti-sigma factor antagonist n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A2_GEMAT
putative anti sigma factor antagonist Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
anti-anti-sigma factor
13_1_40cm_2_scaffold_2364_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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3698..4153
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002D4988B
response regulator receiver protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
response regulator receiver protein
13_1_40cm_2_scaffold_2364_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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4150..5778
DNA (1629bp) protein (543aa)
Putative phosphatase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A0_GEMAT
putative phosphatase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
protein phosphatase 2C domain protein
13_1_40cm_2_scaffold_2364_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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5775..6602
DNA (828bp) protein (276aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.-); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A499_GEMAT
Ribosomal RNA small subunit methyltransferase A
13_1_40cm_2_scaffold_2364_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

6614..7234
DNA (621bp) protein (207aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A498_GEMAT
redox-sensing transcriptional repressor Rex; K01926 redox-sensing transcriptional repressor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Redox-sensing transcriptional repressor rex
13_1_40cm_2_scaffold_2364_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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7419..8651
DNA (1233bp) protein (411aa)
arginine deiminase; K01478 arginine deiminase [EC:3.5.3.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
arginine deiminase id=3947366 bin=GWC2_Bacteroidetes_40_13 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
arginine deiminase
13_1_40cm_2_scaffold_2364_12
unknown

Not on your lists

comp(8719..9351)
DNA (633bp) protein (211aa)

This feature has no annotations

13_1_40cm_2_scaffold_2364_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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9713..10201
DNA (489bp) protein (163aa)
Translation initiation factor IF-3 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A495_GEMAT
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
infC; translation initiation factor IF-3
13_1_40cm_2_scaffold_2364_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


10210..10401
DNA (192bp) protein (64aa)
50S ribosomal protein L35 n=2 Tax=Clostridiales RepID=E0QH50_9FIRM
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RBG_16_Gemmatimonadetes_66_8_curated
50S ribosomal protein L35
13_1_40cm_2_scaffold_2364_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


10414..10767
DNA (354bp) protein (118aa)
50S ribosomal protein L20 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RL20_GEMAT
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
rplT; 50S ribosomal protein L20
13_1_40cm_2_scaffold_2364_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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10770..11792
DNA (1023bp) protein (341aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8AAU5_THEID
Phenylalanyl-tRNA synthetase alpha chain
13_1_40cm_2_scaffold_2364_17
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

11789..14161
DNA (2373bp) protein (791aa)
pheT; phenylalanyl-tRNA synthetase beta chain (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tR
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A491_GEMAT rbh
13_1_40cm_2_scaffold_2364_18
unknown

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14139..14474
DNA (336bp) protein (112aa)

This feature has no annotations

13_1_40cm_2_scaffold_2364_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

14471..14794
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A489_GEMAT
hypothetical protein; K09888 cell division protein ZapA Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function DUF710
13_1_40cm_2_scaffold_2364_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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14855..16369
DNA (1515bp) protein (505aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" s
Ribonuclease Y n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A488_GEMAT
2',3'-cyclic-nucleotide 2'-phosphodiesterase
13_1_40cm_2_scaffold_2364_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

16407..17252
DNA (846bp) protein (282aa)
methenyltetrahydrofolate cyclohydrolase/5,10-methylenetetrahydrofolate dehydrogenase (NADP+) (EC:3.5.4.9 1.5.1.5) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Bifunctional protein FolD id=4569404 bin=GWC2_Planctomycetes_45_44 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
folD; bifunctional protein FolD protein
13_1_40cm_2_scaffold_2364_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

17237..18406
DNA (1170bp) protein (390aa)
xseA; exodeoxyribonuclease VII large subunit (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Exodeoxyribonuclease 7 large subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A486_GEMAT
Exodeoxyribonuclease 7 large subunit
13_1_40cm_2_scaffold_2364_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

18408..18617
DNA (210bp) protein (70aa)
xseB; exodeoxyribonuclease VII small subunit (EC:3.1.11.6); K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Exodeoxyribonuclease 7 small subunit n=1 Tax=Bdellovibrio exovorus JSS RepID=M4VDH4_9DELT
exodeoxyribonuclease VII, small subunit
13_1_40cm_2_scaffold_2364_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

18800..19558
DNA (759bp) protein (253aa)
geranyltranstransferase (EC:2.5.1.10); K13789 geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Geranyltranstransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A484_GEMAT
Polyprenyl synthetase
13_1_40cm_2_scaffold_2364_25
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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19576..21474
DNA (1899bp) protein (633aa)
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7); K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] Tax=GWC2_Gemmatimonadetes_71_10_curated
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A483_GEMAT rbh
1-deoxy-D-xylulose-5-phosphate synthase
13_1_40cm_2_scaffold_2364_26
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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21747..22292
DNA (546bp) protein (182aa)
ppnK; putative inorganic polyphosphate/ATP-NAD kinase (EC:2.7.1.23); K00858 NAD+ kinase [EC:2.7.1.23] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=PPNK_GEMAT
inorganic polyphosphate/ATP-NAD kinase
13_1_40cm_2_scaffold_2364_27
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(22311..23387)
DNA (1077bp) protein (359aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_2_scaffold_2364_28
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(23456..24691)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SE88_RHOMR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN72080.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus mari
13_1_40cm_2_scaffold_2364_29
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(24711..26078)
DNA (1368bp) protein (456aa)
long-chain fatty acid transporter n=1 Tax=Salisaeta longa RepID=UPI0003B60388
fadL; Long-chain fatty acid transport protein; K06076 long-chain fatty acid transport protein Tax=GWC2_Gemmatimonadetes_71_10_curated
long-chain fatty acid transport protein
13_1_40cm_2_scaffold_2364_30
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

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26240..27334
DNA (1095bp) protein (365aa)
Galactokinase {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00015722}; EC=2.7.1.6 {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00015833};; Galactose kinase {ECO:0000256|HAMAP-Rule:M
Galactokinase n=1 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y8L6_THEBD
galactokinase
Displaying items 1-30 of 36 in total

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