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13_1_40cm_2_scaffold_28465

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_28465_1
unknown

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comp(2..115)
DNA (114bp) protein (38aa)

This feature has no annotations

13_1_40cm_2_scaffold_28465_trna_1
unknown

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393..466
DNA (74bp)
transferRNA
13_1_40cm_2_scaffold_28465_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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503..694
DNA (192bp) protein (64aa)
preprotein translocase, SecE subunit Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Preprotein translocase, SecE subunit id=3836410 bin=GWF2_Methylomirabilis_70_14 species=Ruminococcus albus genus=Ruminococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
preprotein translocase subunit SecE
13_1_40cm_2_scaffold_28465_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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691..1248
DNA (558bp) protein (186aa)
NusG antitermination factor; K02601 transcriptional antiterminator NusG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
nusG; component in transcription antitermination id=14627337 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
NusG antitermination factor
13_1_40cm_2_scaffold_28465_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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1277..1696
DNA (420bp) protein (140aa)
rplK; 50S ribosomal protein L11 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L11 id=3447240 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplK; 50S ribosomal protein L11
13_1_40cm_2_scaffold_28465_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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1814..2530
DNA (717bp) protein (239aa)
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L1 id=3447243 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
50S ribosomal protein L1
13_1_40cm_2_scaffold_28465_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2547..3065
DNA (519bp) protein (173aa)
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 id=14627334 bin=bin7_NC10_sister species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
50S ribosomal protein L10
13_1_40cm_2_scaffold_28465_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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3096..3485
DNA (390bp) protein (130aa)
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 id=14627333 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
rplL; 50S ribosomal subunit protein L7/L12
13_1_40cm_2_scaffold_28465_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3560..4105
DNA (546bp) protein (182aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA-directed RNA polymerase subunit beta id=3447253 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rpoB; DNA-directed RNA polymerase subunit beta
Displaying 9 items

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