ggKbase home page

13_1_40cm_2_scaffold_3730

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_3730_1
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(1..591)
DNA (591bp) protein (197aa)
Extracellular ligand-binding receptor n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TDL2_9CHLR
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EFH88357.1}; Flags: Precursor;; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobact
extracellular ligand-binding receptor
13_1_40cm_2_scaffold_3730_2
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(743..1453)
DNA (711bp) protein (237aa)
Amino acid ABC transporter membrane protein 2, PAAT family n=1 Tax=Desulfovibrio africanus PCS RepID=M5Q2D1_DESAF
glutamine abc transporter glutamine-binding protein; K02029 polar amino acid transport system permease protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
polar amino acid ABC transporter inner membrane subunit
13_1_40cm_2_scaffold_3730_3
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(1475..2143)
DNA (669bp) protein (223aa)
Polar amino acid ABC transporter, inner membrane subunit n=2 Tax=Geobacillus RepID=E3IGM8_GEOS0
polar amino acid ABC transporter inner membrane subunit; K10040 putative glutamine transport system permease protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
polar amino acid ABC transporter inner membrane subunit
13_1_40cm_2_scaffold_3730_4
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(2216..3121)
DNA (906bp) protein (302aa)
ABC-type transporter, periplasmic subunit family 3 n=1 Tax=Frankia sp. CN3 RepID=G6HHK7_9ACTO
family 3 extracellular solute-binding protein; K10005 glutamate transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
glutamine ABC transporter substrate-binding protein
13_1_40cm_2_scaffold_3730_5
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(3142..3888)
DNA (747bp) protein (249aa)
ABC transporter-like protein; K10041 putative glutamine transport system ATP-binding protein [EC:3.6.3.-] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
ABC-type polar amino acid transport system, ATPase component n=1 Tax=Brevibacillus sp. BC25 RepID=J2HB53_9BACL
glnQ; glutamine ABC transporter ATP-binding protein
13_1_40cm_2_scaffold_3730_6
R_OD1_Kaiserbacteria_54_11b, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

3896..4432
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI00036C34FF
secreted protein Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_54_11b_curated
hypothetical protein
13_1_40cm_2_scaffold_3730_7
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

4442..5185
DNA (744bp) protein (248aa)
nth; endonuclease III (EC:4.2.99.18) Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
endonuclease III (EC:4.2.99.18)
Endonuclease III (DNA-(Apurinic or apyrimidinic site) lyase) id=4153746 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_3730_8
unknown

Not on your lists

comp(5079..5606)
DNA (528bp) protein (176aa)

This feature has no annotations

13_1_40cm_2_scaffold_3730_9
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(5749..5991)
DNA (243bp) protein (81aa)
anti-sigma factor n=1 Tax=Streptomyces sp. Amel2xE9 RepID=UPI0003780652
Anti-sigma factor Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_2_scaffold_3730_10
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(6001..6582)
DNA (582bp) protein (194aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CFG7_THET1
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
ECF subfamily RNA polymerase sigma-24 subunit
13_1_40cm_2_scaffold_3730_11
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

6746..7306
DNA (561bp) protein (187aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
Endonuclease III n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4ECN8_9CHLR
13_1_40cm_2_scaffold_3730_12
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

comp(7571..8038)
DNA (468bp) protein (156aa)
LuxR family transcriptional regulator n=1 Tax=Agromyces italicus RepID=UPI0003B3DE35
LuxR family transcriptional regulator Tax=RBG_13_Chloroflexi_68_17_curated
LuxR family two component transcriptional regulator
13_1_40cm_2_scaffold_3730_13
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8031..8360)
DNA (330bp) protein (110aa)
Response regulator receiver domain protein n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JRN6_RHOER
LuxR family transcriptional regulator {ECO:0000313|EMBL:KEO82749.1}; TaxID=1157490 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" source="Tumebacillus flagell
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
13_1_40cm_2_scaffold_3730_14
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

8725..9294
DNA (570bp) protein (190aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_2_scaffold_3730_15
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

9304..10050
DNA (747bp) protein (249aa)
two-component system response regulator; K07670 two-component system, OmpR family, response regulator MtrA Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
two component transcriptional regulator, winged helix family; K07667 two-component system, OmpR family, KDP operon response regulator KdpE id=14629315 bin=bin8_Chloro species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
two-component system response regulator
13_1_40cm_2_scaffold_3730_16
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10069..11238)
DNA (1170bp) protein (390aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriacea
Two-component sensor histidine kinase n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8K2Q1_9BACT
PAS/PAC sensor signal transduction histidine kinase
13_1_40cm_2_scaffold_3730_17
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

11654..12925
DNA (1272bp) protein (424aa)
putative hydrolase Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_2_scaffold_3730_18
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

13572..14273
DNA (702bp) protein (234aa)
alcohol dehydrogenase class III; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] Tax=CSP1_6_Rokubacteria
alcohol dehydrogenase class III; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] id=14627216 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alcohol dehydrogenase zinc-binding domain-containing protein
Displaying 18 items

View Taxonomy