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13_1_40cm_2_scaffold_3859

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_3859_1
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..243
DNA (243bp) protein (81aa)
Cupin 2 protein n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GY23_CUPNN
cupin 2 protein
Cupin 2 protein {ECO:0000313|EMBL:AEI83147.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strai
13_1_40cm_2_scaffold_3859_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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569..958
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z1I7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM30079.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="M
cupin 2 domain-containing protein
13_1_40cm_2_scaffold_3859_3
Corynebacterium accolens, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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1659..2540
DNA (882bp) protein (294aa)
Cysteine-rich domain protein {ECO:0000313|EMBL:EFM42713.1}; TaxID=862512 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium accolens A
13_1_40cm_2_scaffold_3859_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(2562..4868)
DNA (2307bp) protein (769aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4) Tax=GWC2_Rokubacteria_70_16_curated
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein id=3162221 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_3859_5
R_NC10_66_22, NC10, Bacteria

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comp(4989..6113)
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI000365E9C1
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
13_1_40cm_2_scaffold_3859_6
unknown

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comp(6136..6474)
DNA (339bp) protein (113aa)

This feature has no annotations

13_1_40cm_2_scaffold_3859_7
unknown

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6637..6912
DNA (276bp) protein (92aa)

This feature has no annotations

13_1_40cm_2_scaffold_3859_8
unknown

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comp(6952..7134)
DNA (183bp) protein (61aa)

This feature has no annotations

13_1_40cm_2_scaffold_3859_9
unknown

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comp(7248..7541)
DNA (294bp) protein (98aa)

This feature has no annotations

13_1_40cm_2_scaffold_3859_10
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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7616..8152
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1F4_SPHTD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ38071.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" sourc
13_1_40cm_2_scaffold_3859_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(8159..9037)
DNA (879bp) protein (293aa)
nucleoside-triphosphatase rdgB (EC:3.6.1.15); K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] id=14625265 bin=bin7_NC10_sister species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
nucleoside-triphosphatase rdgB (EC:3.6.1.15); K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] Tax=CSP1_6_Rokubacteria
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
13_1_40cm_2_scaffold_3859_trna_2
unknown

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comp(8481..8554)
DNA (74bp)
transferRNA
13_1_40cm_2_scaffold_3859_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(9087..9818)
DNA (732bp) protein (244aa)
rph; ribonuclease PH (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ribonuclease PH id=4994649 bin=GWA2_Methylomirabilis_73_35 species=Desulfitobacterium metallireducens genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribonuclease PH
13_1_40cm_2_scaffold_3859_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(9823..11244)
DNA (1422bp) protein (474aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28) id=14625267 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
13_1_40cm_2_scaffold_3859_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(12007..12486)
DNA (480bp) protein (160aa)
smpB; SsrA-binding protein; K03664 SsrA-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SsrA-binding protein id=2862716 bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
SsrA-binding protein
13_1_40cm_2_scaffold_3859_trna_1
unknown

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12519..12602
DNA (84bp)
transferRNA
13_1_40cm_2_scaffold_3859_15
unknown

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13168..13434
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_40cm_2_scaffold_3859_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(13576..14172)
DNA (597bp) protein (199aa)
ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-polyprenyl-4-hydroxybenzoate decarboxylase id=2319271 bin=GWA2_Methylomirabilis_73_35 species=Citrobacter freundii genus=Citrobacter taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ubiX; 3-polyprenyl-4-hydroxybenzoate decarboxylase
13_1_40cm_2_scaffold_3859_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(14169..14444)
DNA (276bp) protein (92aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3212383 bin=GWC2_Methylomirabilis_70_16 species=Hydrogenobacter thermophilus genus=Hydrogenobacter taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_3859_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(14444..14692)
DNA (249bp) protein (83aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3299399 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_3859_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(14757..16241)
DNA (1485bp) protein (495aa)
osmosensitive K+ channel signal transduction histidine kinase; K07646 two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Integral membrane sensor signal transduction histidine kinase id=3299505 bin=GWA2_Methylomirabilis_73_35 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sensor histidine kinase DivJ
13_1_40cm_2_scaffold_3859_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(16238..17029)
DNA (792bp) protein (264aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3299507 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_3859_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(17043..17741)
DNA (699bp) protein (233aa)
PAS/PAC sensor-containing diguanylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Diguanylate cyclase with PAS/PAC sensor id=3299509 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HAMP domain/HD domain-containing protein
13_1_40cm_2_scaffold_3859_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(17726..18103)
DNA (378bp) protein (126aa)
ompR; response regulator receiver Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component transcriptional regulator, winged helix family id=3299511 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
13_1_40cm_2_scaffold_3859_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(18235..18645)
DNA (411bp) protein (137aa)
atpC; ATP synthase subunit epsilon, membrane-bound, F1 sector (EC:3.6.3.14) Tax=GWA2_Rokubacteria_73_35_curated
atpC; ATP synthase subunit epsilon, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase epsilon chain id=3299513 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_3859_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(18646..19254)
DNA (609bp) protein (203aa)
atpD; ATP synthase subunit beta, membrane-bound, F1 sector (EC:3.6.3.14) Tax=GWA2_Rokubacteria_73_35_curated
ATP synthase subunit beta n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=ATPB_GEODF
F0F1 ATP synthase subunit beta
Displaying 26 items

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