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13_1_40cm_2_scaffold_461

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_461_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1..150
DNA (150bp) protein (50aa)
Multi-sensor signal transduction histidine kinase id=4558719 bin=GWA2_Methylomirabilis_73_35 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two-component sensor histidine kinase Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_2_scaffold_461_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

156..545
DNA (390bp) protein (130aa)
Transcriptional regulatory protein id=4558721 bin=GWA2_Methylomirabilis_73_35 species=ACD65 genus=ACD65 taxon_order=ACD65 taxon_class=ACD65 phylum=PER tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yycF; transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
response regulator receiver protein
13_1_40cm_2_scaffold_461_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

505..927
DNA (423bp) protein (141aa)
Two-component response regulator id=4558725 bin=GWA2_Methylomirabilis_73_35 species=ACD51 genus=ACD51 taxon_order=ACD51 taxon_class=ACD51 phylum=PER tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
winged helix family two component transcriptional regulator; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB Tax=GWA2_Rokubacteria_73_35_curated
two component transcriptional regulator, winged helix family
13_1_40cm_2_scaffold_461_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(940..1509)
DNA (570bp) protein (190aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10); K00762 orotate phosphoribosyltransferase [EC:2.4.2.10] Tax=GWA2_Rokubacteria_73_35_curated
Orotate phosphoribosyltransferase id=4815545 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
orotate phosphoribosyltransferase
13_1_40cm_2_scaffold_461_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1506..2024)
DNA (519bp) protein (173aa)
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] Tax=GWA2_Rokubacteria_73_35_curated
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase id=4815544 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_461_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2242..5448)
DNA (3207bp) protein (1069aa)
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) id=14625178 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5)
13_1_40cm_2_scaffold_461_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5479..5745)
DNA (267bp) protein (89aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4530407 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_461_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5753..6880)
DNA (1128bp) protein (376aa)
carA; carbamoyl phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit (EC:6.3.5.5) id=14625175 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
carA; carbamoyl phosphate synthase small subunit
13_1_40cm_2_scaffold_461_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6877..8175)
DNA (1299bp) protein (433aa)
pyrC; dihydroorotase (EC:3.5.2.3) Tax=GWA2_Rokubacteria_73_35_curated
dihydroorotase (EC:3.5.2.3)
Dihydroorotase id=4530400 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_461_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8172..9110)
DNA (939bp) protein (313aa)
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2) id=14625173 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2)
13_1_40cm_2_scaffold_461_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(9112..9675)
DNA (564bp) protein (188aa)
PyrR; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase (EC:2.4.2.9); K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] Tax=RI
PyrR; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR id=4792710 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_1_40cm_2_scaffold_461_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(9763..11028)
DNA (1266bp) protein (422aa)
atzC; N-isopropylammelide isopropylaminohydrolase (EC:3.5.99.4)
Amidohydrolase id=4792716 bin=GWC2_Methylomirabilis_70_16 species=Enterococcus faecalis genus=Enterococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
amidohydrolase family protein Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_2_scaffold_461_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(11025..11588)
DNA (564bp) protein (188aa)
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein id=14626506 bin=bin7_NC10_sister species=Deinococcus sp. 2009 genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_461_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11598..12965)
DNA (1368bp) protein (456aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=2085290 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
two component, sigma54 specific, Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_
sigma-54-dependent transcriptional response regulator
13_1_40cm_2_scaffold_461_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13035..15260)
DNA (2226bp) protein (742aa)
nitrogen regulation protein NtrY; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] id=14625170 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
sensor histidine kinase, HAMP and PAS domain-containing
13_1_40cm_2_scaffold_461_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15260..15826)
DNA (567bp) protein (189aa)
Putative uncharacterized protein id=2287876 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_2_scaffold_461_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15967..16896)
DNA (930bp) protein (310aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase id=2287875 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium HF0770_27F21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
13_1_40cm_2_scaffold_461_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(17042..17458)
DNA (417bp) protein (139aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14625167 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Displaying 18 items

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