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13_1_40cm_2_scaffold_468

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_468_1
RBG_16_Archaea_50_20_curated, Archaea

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1023..1571
DNA (549bp) protein (183aa)
Putative uncharacterized protein Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_2_scaffold_468_2
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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1578..2114
DNA (537bp) protein (179aa)
Tax=RBG_13_Bathyarchaeota_38_9_curated
13_1_40cm_2_scaffold_468_3
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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2182..3288
DNA (1107bp) protein (369aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8P6_9ARCH
NurA domain-containing protein Tax=RBG_13_Bathyarchaeota_38_9_curated
hypothetical protein
13_1_40cm_2_scaffold_468_4
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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3289..4713
DNA (1425bp) protein (475aa)
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
DUF87 domain-containing protein id=2756267 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Candidatus Nitrososphaera gargensis genus=Nitrososphaera taxon_order=Nitrososphaerales taxon_class=unknown phylum=Thaumarchaeota tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
13_1_40cm_2_scaffold_468_5
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(4829..6394)
DNA (1566bp) protein (522aa)
Putative cysteine synthase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I761_NITGG
cysteine synthase
Cysteine synthase {ECO:0000313|EMBL:AIF82707.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososph
13_1_40cm_2_scaffold_468_6
RBG_16_Archaea_50_20_curated, Archaea

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6453..6830
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DII7_9EURY
Putative uncharacterized protein Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_2_scaffold_468_7

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6916..7752
DNA (837bp) protein (279aa)
Putative dihydroorotate dehydrogenase electron transfer subunit n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AU29_9ARCH
Oxidoreductase domain-containing protein (PyrDII) {ECO:0000313|EMBL:AIF07353.1}; TaxID=1456096 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_2
pyrK; putative dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit
13_1_40cm_2_scaffold_468_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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8450..9631
DNA (1182bp) protein (394aa)
Glycosyl transferase family 2 n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QV94_CHLT3
glycosyl transferase family 2 protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
family 2 glycosyl transferase
13_1_40cm_2_scaffold_468_9
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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9658..11253
DNA (1596bp) protein (532aa)
ELP3; RNA polymerase II complex ELP3 subunit; K07739 elongator complex protein 3 [EC:2.3.1.48] Tax=RBG_13_Bathyarchaeota_46_16b_curated
ELP3 component of the RNA polymerase II complex, consists of an N-terminal BioB/LipA-like domain and a C-terminal histone acetylase domain n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Q8TWI2_METKA rbh
ELP3; RNA polymerase II complex ELP3 subunit
13_1_40cm_2_scaffold_468_10
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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11309..12643
DNA (1335bp) protein (445aa)
glutamyl-tRNA(Gln) amidotransferase subunit D; K09482 glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7] Tax=RBG_13_Bathyarchaeota_46_16b_curated
glutamyl-tRNA(Gln) amidotransferase subunit D (EC:6.3.5.7)
hypothetical protein n=1 Tax=Aigarchaeota archaeon JGI 0000001-H6 RepID=UPI0003673AA1
13_1_40cm_2_scaffold_468_11
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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12920..14548
DNA (1629bp) protein (543aa)
Glutamyl-tRNA(Gln) amidotransferase subunit E n=1 Tax=Thermofilum sp. 1910b RepID=S5ZD67_9CREN
glutamyl-tRNA(Gln) amidotransferase Tax=RBG_13_Bathyarchaeota_38_9_curated
glutamyl-tRNA(Gln) amidotransferase
13_1_40cm_2_scaffold_468_12

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14545..15024
DNA (480bp) protein (160aa)
AsnC family transcriptional regulator n=1 Tax=Nitrosopumilus sp. SJ RepID=UPI00037E27C7
Marine sediment metagenome DNA, contig: S01H1_L05582 {ECO:0000313|EMBL:GAF82676.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
transcriptional regulator, AsnC family
13_1_40cm_2_scaffold_468_13
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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comp(15021..15860)
DNA (840bp) protein (280aa)
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20) Tax=RBG_16_Thaumarchaeota_49_8_curated
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Methanofollis liminatans DSM 4140 RepID=J0RWZ0_9EURY
13_1_40cm_2_scaffold_468_14
RBG_16_Archaea_50_20_curated, Archaea

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comp(15838..16998)
DNA (1161bp) protein (387aa)
trpB; tryptophan synthase subunit beta (EC:4.1.2.20) Tax=RBG_16_Archaea_50_20_curated
trpB; tryptophan synthase subunit beta (EC:4.1.2.20)
Tryptophan synthase beta chain n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBB0_NITGG
13_1_40cm_2_scaffold_468_15
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(16995..17771)
DNA (777bp) protein (259aa)
trpC; indole-3-glycerol-phosphate synthase (EC:4.1.1.48)
indole-3-glycerol-phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48] id=14428293 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Indole-3-glycerol-phosphate synthase {ECO:0000313|EMBL:AIC14747.1}; EC=4.1.1.48 {ECO:0000313|EMBL:AIC14747.1};; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitro
13_1_40cm_2_scaffold_468_16
RBG_16_Archaea_50_20_curated, Archaea

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comp(17777..18826)
DNA (1050bp) protein (350aa)
trpGD; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase (EC:4.1.3.27); K13497 anthranilate synthase/phosphoribosyltransferase [EC:4.1.3.27 2.4.2.18] Tax=RBG_16_Archaea_50
Anthranilate phosphoribosyltransferase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=TRPD_SYMTH
anthranilate phosphoribosyltransferase
13_1_40cm_2_scaffold_468_17
RBG_16_Archaea_50_20_curated, Archaea

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comp(18832..19410)
DNA (579bp) protein (193aa)
trpG; anthranilate synthase component II (EC:4.1.3.27) Tax=RBG_16_Archaea_50_20_curated
trpG; anthranilate synthase component II (EC:4.1.3.27)
Anthranilate synthase component II n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN19_NITGG
13_1_40cm_2_scaffold_468_18
RBG_16_Archaea_50_20_curated, Archaea

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comp(19407..20675)
DNA (1269bp) protein (423aa)
trpE; anthranilate synthase component 1 (EC:4.1.3.27) Tax=RBG_16_Archaea_50_20_curated
trpE; anthranilate synthase component 1 (EC:4.1.3.27)
Anthranilate synthase component 1 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBR4_NITGG
13_1_40cm_2_scaffold_468_19
Ignicoccus hospitalis, Ignicoccus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

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comp(20851..21936)
DNA (1086bp) protein (362aa)
Chorismate mutase n=1 Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=A8AAX2_IGNH4
chorismate mutase
Chorismate mutase {ECO:0000313|EMBL:ABU82074.1}; TaxID=453591 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Ignicoccus.;" source="Ignicoccus hospitalis (strain
13_1_40cm_2_scaffold_468_20
RBG_16_Archaea_50_20_curated, Archaea

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comp(21943..23043)
DNA (1101bp) protein (367aa)
aroC; chorismate synthase (EC:4.2.3.5) Tax=RBG_16_Archaea_50_20_curated
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N894_9ARCH
13_1_40cm_2_scaffold_468_21
RBG_16_Archaea_50_20_curated, Archaea

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comp(23033..24121)
DNA (1089bp) protein (363aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] Tax=RBG_16_Archaea_50_20_curated
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
Probable 3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=AROA_UNCMA
13_1_40cm_2_scaffold_468_22
RBG_16_Archaea_50_20_curated, Archaea

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comp(24304..24987)
DNA (684bp) protein (228aa)
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71] Tax=RBG_16_Archaea_50_20_curated
shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N6H8_9ARCH
13_1_40cm_2_scaffold_468_23
RBG_16_Chloroflexi_58_8_curated, Chloroflexi, Bacteria

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comp(25128..25955)
DNA (828bp) protein (276aa)
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25] Tax=RBG_16_Chloroflexi_58_8_curated
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWT7_METFV
13_1_40cm_2_scaffold_468_24
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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comp(25962..26645)
DNA (684bp) protein (228aa)
aroD; 3-dehydroquinate dehydratase, type I; K03785 3-dehydroquinate dehydratase I [EC:4.2.1.10] Tax=RBG_13_Bathyarchaeota_38_9_curated
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K3N1_DEHLB
13_1_40cm_2_scaffold_468_25
RBG_16_Archaea_50_20_curated, Archaea

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comp(26642..27700)
DNA (1059bp) protein (353aa)
3-dehydroquinate synthase; K11646 dehydroquinate synthase II [EC:1.4.1.-] Tax=RBG_16_Archaea_50_20_curated
aroB; 3-dehydroquinate synthase (EC:1.4.1.-)
3-dehydroquinate synthase n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IAN9_METCZ
13_1_40cm_2_scaffold_468_26
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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comp(27663..28451)
DNA (789bp) protein (263aa)
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase (EC:4.1.2.13); K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13] Tax=RBG_13_Bathyarchaeota_38_9_curated
fructose-bisphosphate aldolase (EC:4.1.2.13)
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase n=1 Tax=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) RepID=Q2NHZ5_METST
13_1_40cm_2_scaffold_468_27
RBG_16_Archaea_50_20_curated, Archaea

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comp(28486..29535)
DNA (1050bp) protein (350aa)
Asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] Tax=RBG_16_Archaea_50_20_curated
Asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Q8TVK0_METKA
13_1_40cm_2_scaffold_468_28
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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comp(29537..30637)
DNA (1101bp) protein (367aa)
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4] Tax=RBG_13_Bathyarchaeota_38_9_curated
aspartate kinase (EC:2.7.2.4)
Aspartokinase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYU4_METFV
13_1_40cm_2_scaffold_468_29
unknown

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comp(31015..31542)
DNA (528bp) protein (176aa)

This feature has no annotations

13_1_40cm_2_scaffold_468_30
unknown

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comp(31682..31828)
DNA (147bp) protein (49aa)

This feature has no annotations

Displaying items 1-30 of 44 in total

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