ggKbase home page

13_1_40cm_2_scaffold_5415

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_5415_1
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

2..1093
DNA (1092bp) protein (364aa)
phosphoenolpyruvate carboxykinase (EC:4.1.1.49); K01610 phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Phosphoenolpyruvate carboxykinase n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TC29_HELMI
pckA; phosphoenolpyruvate carboxykinase
13_1_40cm_2_scaffold_5415_2
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists


1547..1846
DNA (300bp) protein (100aa)
50S ribosomal protein L23 n=1 Tax=Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) RepID=I4BV23_ANAMD
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 Tax=RBG_16_Chloroflexi_64_32_curated
50S ribosomal protein L23
13_1_40cm_2_scaffold_5415_3

Not on your lists


1848..2678
DNA (831bp) protein (277aa)
50S ribosomal protein L2 n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THE1_9CHLR rbh
Uncharacterized protein {ECO:0000313|EMBL:KKM62495.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rplB; 50S ribosomal protein L2
13_1_40cm_2_scaffold_5415_4

Not on your lists


2682..2972
DNA (291bp) protein (97aa)
30S ribosomal protein S19 n=1 Tax=Chloroflexi bacterium SCGC AB-629-P13 RepID=UPI0003652C8B
Uncharacterized protein {ECO:0000313|EMBL:KKM62496.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
30S ribosomal protein S19
13_1_40cm_2_scaffold_5415_5

Not on your lists


2972..3310
DNA (339bp) protein (113aa)
50S ribosomal protein L22 n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8DYC9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KKM62497.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
50S ribosomal protein L22
13_1_40cm_2_scaffold_5415_6
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists


3310..4116
DNA (807bp) protein (269aa)
30S ribosomal protein S3 n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NR57_ROSCS
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=RBG_16_Chloroflexi_64_32_curated
30S ribosomal protein S3
13_1_40cm_2_scaffold_5415_7
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists


4103..4516
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Acaryochloris marina (strain MBIC 11017) RepID=RL16_ACAM1
50S ribosomal protein L16 Tax=RBG_16_Chloroflexi_64_32_curated
rplP; 50S ribosomal protein L16
13_1_40cm_2_scaffold_5415_8

Not on your lists


4520..4756
DNA (237bp) protein (79aa)
50S ribosomal protein L29 n=1 Tax=Dehalococcoides ethenogenes (strain 195) RepID=RL29_DEHE1
Uncharacterized protein {ECO:0000313|EMBL:KKK50620.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
50S ribosomal protein L29
13_1_40cm_2_scaffold_5415_9

Not on your lists


4753..5394
DNA (642bp) protein (214aa)
30S ribosomal protein S17 n=1 Tax=Rubidibacter lacunae KORDI 51-2 RepID=U5DNP1_9CHRO
Marine sediment metagenome DNA, contig: S01H1_S37008 {ECO:0000313|EMBL:GAG48668.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rpsQ; 30S ribosomal protein S17
13_1_40cm_2_scaffold_5415_10
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists


5391..5759
DNA (369bp) protein (123aa)
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RBG_16_Chloroflexi_64_32_curated
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 id=24537576 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
50S ribosomal protein L14
13_1_40cm_2_scaffold_5415_11
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists


5762..6109
DNA (348bp) protein (116aa)
50S ribosomal protein L24 n=1 Tax=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) RepID=RL24_FERNB
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RBG_16_Chloroflexi_64_32_curated
rplX; 50S ribosomal protein L24
13_1_40cm_2_scaffold_5415_12
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists


6120..6668
DNA (549bp) protein (183aa)
50S ribosomal protein L5 n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZK0_CALAS
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RBG_16_Chloroflexi_64_32_curated
rplE; 50S ribosomal protein L5
13_1_40cm_2_scaffold_5415_13

Not on your lists


6823..7218
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Sulfobacillus thermosulfidooxidans RepID=UPI0002FEBA4F
Uncharacterized protein {ECO:0000313|EMBL:KKK59785.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
30S ribosomal protein S8
13_1_40cm_2_scaffold_5415_14
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists


7241..7768
DNA (528bp) protein (176aa)
50S ribosomal protein L6 n=1 Tax=Caldibacillus debilis RepID=UPI00036E5F9F
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RBG_16_Chloroflexi_64_32_curated
50S ribosomal protein L6
13_1_40cm_2_scaffold_5415_15

Not on your lists


7779..8147
DNA (369bp) protein (123aa)
50S ribosomal protein L18 n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=RL18_DICTD
Uncharacterized protein {ECO:0000313|EMBL:KKK83524.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rplR; 50S ribosomal protein L18
13_1_40cm_2_scaffold_5415_16
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists


8158..8694
DNA (537bp) protein (179aa)
30S ribosomal protein S5 n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CKG9_DESK7
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RBG_16_Chloroflexi_64_32_curated
30S ribosomal protein S5
13_1_40cm_2_scaffold_5415_17

Not on your lists


8875..9450
DNA (576bp) protein (192aa)
50S ribosomal protein L15 n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K1A1_DEHLB
Uncharacterized protein {ECO:0000313|EMBL:KKM98659.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
50S ribosomal protein L15
13_1_40cm_2_scaffold_5415_18
RBG_19FT_COMBO_Deltaproteobacteria_56_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9850..10134)
DNA (285bp) protein (95aa)
hypothetical protein Tax=RBG_19FT_COMBO_Deltaproteobacteria_56_10_curated
13_1_40cm_2_scaffold_5415_19

Not on your lists

10230..10748
DNA (519bp) protein (173aa)
Protein translocase subunit SecY n=1 Tax=uncultured bacterium HF4000_05M23 RepID=E0XPY0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKM98660.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
preprotein translocase subunit SecY
13_1_40cm_2_scaffold_5415_20

Not on your lists

10756..11406
DNA (651bp) protein (217aa)
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Firmicutes bacterium CAG:194 RepID=R5QP76_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KKM98661.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
13_1_40cm_2_scaffold_5415_21

Not on your lists

11406..12161
DNA (756bp) protein (252aa)
Methionine aminopeptidase n=1 Tax=Dehalococcoides sp. (strain VS) RepID=D2BGZ3_DEHSV
Uncharacterized protein {ECO:0000313|EMBL:KKL58214.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
map; methionine aminopeptidase
13_1_40cm_2_scaffold_5415_22
RBG_16_Chloroflexi_56_11_curated, Chloroflexi, Bacteria

Not on your lists

12782..12895
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CFF0_THET1
50S ribosomal protein L36
50S ribosomal protein L36; K02919 large subunit ribosomal protein L36 Tax=RBG_16_Chloroflexi_56_11_curated
13_1_40cm_2_scaffold_5415_23
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists


12899..13282
DNA (384bp) protein (128aa)
30S ribosomal protein S13 n=1 Tax=Caloramator australicus RC3 RepID=I7LGH4_9CLOT
30S ribosomal protein S13 Tax=RBG_16_Chloroflexi_64_32_curated
30S ribosomal protein S13
13_1_40cm_2_scaffold_5415_24
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists


13296..13415
DNA (120bp) protein (40aa)
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RBG_16_Chloroflexi_64_32_curated
30S ribosomal protein S11 id=4362188 bin=GWC2_Chloroflexi_73_18 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Displaying 24 items

View Taxonomy