ggKbase home page

13_1_40cm_2_scaffold_589

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_589_1
RBG_13_Spirochaetes_51_14_curated, Spirochaetes, Bacteria

Not on your lists

1..915
DNA (915bp) protein (305aa)
glucosamine--fructose-6-phosphate aminotransferase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RBG_13_Spirochaetes_51_14_curated
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB63_GEMAT id=5224228 bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
glucosamine--fructose-6-phosphate aminotransferase
13_1_40cm_2_scaffold_589_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

920..1555
DNA (636bp) protein (212aa)
Periplasmic polysaccharide biosynthesis/export protein n=1 Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AJS2_GEOSK
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
polysaccharide export protein
13_1_40cm_2_scaffold_589_3
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

1560..2726
DNA (1167bp) protein (389aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14); K01791 UDP-N-acetylglucosamine 2-epimerase [EC:5.1.3.14] Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Schlesneria paludicola RepID=UPI00029B1174
13_1_40cm_2_scaffold_589_4
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

3015..3875
DNA (861bp) protein (287aa)
Anti-sigma-factor antagonist id=4337253 bin=GWC2_Ignavibacteria_56_12 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
anti-sigma-factor antagonist Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
anti-sigma-factor antagonist
13_1_40cm_2_scaffold_589_5
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

3907..4299
DNA (393bp) protein (131aa)
Antagonist protein RsbS id=4337252 bin=GWC2_Ignavibacteria_56_12 species=Mycobacterium xenopi genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
anti-sigma-factor antagonist Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
rsbS; putative sigma activity regulator RsbS
13_1_40cm_2_scaffold_589_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4292..4702
DNA (411bp) protein (137aa)
Anti-sigma regulatory factor (Ser/Thr protein kinase) {ECO:0000313|EMBL:KCZ71458.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae;
Putative anti-sigma regulatory factor, serine/threonine protein kinase id=4927123 bin=GWA2_Ignavibacteria_55_11 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
anti-sigma regulatory factor, serine/threonine protein kinase
13_1_40cm_2_scaffold_589_7
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

4951..5283
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI0003683974
protein serine/threonine phosphatase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
protein serine/threonine phosphatase
13_1_40cm_2_scaffold_589_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5280..6698
DNA (1419bp) protein (473aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=2304889 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
two component sigma54 specific Fis family transcriptional regulator
13_1_40cm_2_scaffold_589_9
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6695..7987
DNA (1293bp) protein (431aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Burkholderia RepID=A0KE50_BURCH id=5225201 bin=16ft_combo_ws3_JS1 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Uncharacterized protein {ECO:0000313|EMBL:KFN51597.1}; Flags: Fragment;; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="
hypothetical protein
13_1_40cm_2_scaffold_589_10
unknown

Not on your lists

comp(7995..8186)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_2_scaffold_589_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(8252..9136)
DNA (885bp) protein (295aa)
Amidinotransferase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=D2Z5E8_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
13_1_40cm_2_scaffold_589_12
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9212..10855
DNA (1644bp) protein (548aa)
Amidotransferase-related protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PGG0_9DELT rbh
Amidotransferase-related protein {ECO:0000313|EMBL:EPX63455.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" s
gatA2; amidase
13_1_40cm_2_scaffold_589_13
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10847..12130)
DNA (1284bp) protein (428aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AT75_RUBXD
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABG05403.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" so
13_1_40cm_2_scaffold_589_14
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(12123..12713)
DNA (591bp) protein (197aa)
DNA-3-methyladenine glycosylase I (EC:3.2.2.20); K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20] id=14431486 bin=bin3_NC10 species=Desulfovibrio salexigens genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
DNA-3-methyladenine glycosylase I (EC:3.2.2.20); K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20] Tax=CSP1_5_NC10
tag; 3-methyladenine DNA glycosylase
13_1_40cm_2_scaffold_589_15
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12791..13750
DNA (960bp) protein (320aa)
Quinone oxidoreductase n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U1B8_9RHOB
Quinone oxidoreductase {ECO:0000313|EMBL:EAQ02101.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis
Zn-dependant oxidoreductase
13_1_40cm_2_scaffold_589_16
Tatlockia micdadei, Tatlockia, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13767..14933
DNA (1167bp) protein (389aa)
Putative uncharacterized protein n=1 Tax=Burkholderia sp. (strain 383) RepID=Q39N69_BURS3
conserved protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:CEG59969.1}; TaxID=451 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Tatlockia.;" source="Tatlockia micdadei (Legione
13_1_40cm_2_scaffold_589_17
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

14969..15742
DNA (774bp) protein (258aa)
hypothetical protein; K00540 [EC:1.-.-.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
Short-chain dehydrogenase/reductase SDR n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZIC0_NODSP
hypothetical protein
13_1_40cm_2_scaffold_589_18
unknown

Not on your lists

15739..16410
DNA (672bp) protein (224aa)

This feature has no annotations

13_1_40cm_2_scaffold_589_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16379..17392)
DNA (1014bp) protein (338aa)
putative oxidoreductase; K00459 nitronate monooxygenase [EC:1.13.12.16] Tax=RBG_16_Acidobacteria_70_10_curated
Putative oxidoreductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A858_GEMAT id=5224739 bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative oxidoreductase
13_1_40cm_2_scaffold_589_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(17389..17850)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A859_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_2_scaffold_589_21
Oscillatoriales cyanobacterium JSC-12, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(17847..19607)
DNA (1761bp) protein (587aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GIA3_9CYAN
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:EKQ67231.1}; TaxID=864702 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales.;" source="Oscillatoriales cyanob
hypothetical protein
13_1_40cm_2_scaffold_589_22
RBG_16_Elusimicrobia_66_12_curated, Elusimicrobia, Bacteria

Not on your lists

20003..21328
DNA (1326bp) protein (442aa)
adenosylmethionine-8-amino-7-oxononanoate aminotransferase Tax=RBG_16_Elusimicrobia_66_12_curated
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase id=4917884 bin=GWA2_Elusimicrobia_66_18 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
class III aminotransferase
13_1_40cm_2_scaffold_589_23
R_Elusimicrobia_57_9, Elusimicrobia, Bacteria

Not on your lists

21300..22886
DNA (1587bp) protein (529aa)
aldH; aldehyde dehydrogenase (EC:1.2.1.-); K00294 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.1.12] Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_57_9_curated
aldH; aldehyde dehydrogenase (EC:1.2.1.-)
1-pyrroline-5-carboxylate dehydrogenase 1 id=4917885 bin=GWA2_Elusimicrobia_66_18 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
13_1_40cm_2_scaffold_589_24
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

23188..24168
DNA (981bp) protein (327aa)
4-aminobutyrate aminotransferase; K00823 4-aminobutyrate aminotransferase [EC:2.6.1.19] Tax=GWA2_Elusimicrobia_69_24_curated
Acetylornithine aminotransferase id=4970915 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
acetylornithine transaminase
13_1_40cm_2_scaffold_589_25
GWC2_Elusimicrobia_65_9_curated, Elusimicrobia, Bacteria

Not on your lists

24190..25083
DNA (894bp) protein (298aa)
3-oxoadipate:succinyl-CoA transferase subunit A; K01039 glutaconate CoA-transferase, subunit A [EC:2.8.3.12] Tax=GWC2_Elusimicrobia_65_9_curated
Subunit A 3-oxoadipate CoA-transferase id=4917917 bin=GWA2_Elusimicrobia_66_18 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
3-oxoadipate:succinyl-CoA transferase subunit A
13_1_40cm_2_scaffold_589_26
CG_Elusi_04, Elusimicrobia, Bacteria

Not on your lists

25109..25849
DNA (741bp) protein (247aa)
3-oxoacid CoA-transferase n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U3G7_MYXSD
3-oxoacid CoA-transferase Tax=CG_Elusi_04
3-oxoacid CoA-transferase
13_1_40cm_2_scaffold_589_27
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25846..26742
DNA (897bp) protein (299aa)
Secreted protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJ81_9GAMM
periplasmic component of the Tol biopolymer transport system Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
periplasmic component of the Tol biopolymer transport system
Displaying 27 items

View Taxonomy