ggKbase home page

13_1_40cm_2_scaffold_603

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_603_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

56..2278
DNA (2223bp) protein (741aa)
phosphoribosylformylglycinamidine synthase II (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
purL; phosphoribosylformylglycinamidine synthase subunit PurL (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase 2 id=3877242 bin=GWF2_Methylomirabilis_70_14 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_603_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

2259..3671
DNA (1413bp) protein (471aa)
purF; amidophosphoribosyltransferase (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) (EC:2.4.2.14) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
purF; amidophosphoribosyltransferase (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) (EC:2.4.2.14) id=14625428 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
purF; amidophosphoribosyltransferase (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) (EC:2.4.2.14)
13_1_40cm_2_scaffold_603_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3673..4704
DNA (1032bp) protein (344aa)
phosphoribosylaminoimidazole synthetase (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase id=1817203 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_603_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4818..5324
DNA (507bp) protein (169aa)
phosphoribosylglycinamide formyltransferase; K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] Tax=GWA2_Rokubacteria_73_35_curated
Phosphoribosylglycinamide formyltransferase, folate-dependent id=4153845 bin=GWC2_Methylomirabilis_70_16 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
phosphoribosylglycinamide formyltransferase
13_1_40cm_2_scaffold_603_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5321..6916
DNA (1596bp) protein (532aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3 3.5.4.10); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydro
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] id=14625435 bin=bin7_NC10_sister species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3)
13_1_40cm_2_scaffold_603_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6928..7827
DNA (900bp) protein (300aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Tetratricopeptide TPR_2 repeat protein id=3389043 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_2_scaffold_603_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8084..9349
DNA (1266bp) protein (422aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase id=3389045 bin=GWC2_Methylomirabilis_70_24 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_2_scaffold_603_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9346..9879
DNA (534bp) protein (178aa)
hypothetical protein; K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSV9_9FIRM
purE; phosphoribosylaminoimidazole carboxylase
13_1_40cm_2_scaffold_603_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9876..10502
DNA (627bp) protein (209aa)
translation factor; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative translation factor id=4621962 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation factor
13_1_40cm_2_scaffold_603_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10567..11118
DNA (552bp) protein (184aa)
molybdopterin-guanine dinucleotide biosynthesis protein A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Molybdenum cofactor guanylyltransferase id=4621961 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdopterin-guanine dinucleotide biosynthesis protein A
13_1_40cm_2_scaffold_603_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11142..12323
DNA (1182bp) protein (394aa)
thiI; thiamine biosynthesis protein thiI Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Probable tRNA sulfurtransferase id=4621862 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
thiI; thiamine biosynthesis protein thiI
13_1_40cm_2_scaffold_603_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12499..12975
DNA (477bp) protein (159aa)
RpiB/LacA/LacB family sugar-phosphate isomerase (EC:5.3.1.6); K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6] Tax=GWA2_Rokubacteria_73_35_curated
Sugar-phosphate isomerase, RpiB/LacA/LacB family id=4621857 bin=GWA2_Methylomirabilis_73_35 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribose 5-phosphate isomerase B
13_1_40cm_2_scaffold_603_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12959..14206
DNA (1248bp) protein (416aa)
glyA; serine hydroxymethyltransferase; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] Tax=GWA2_Rokubacteria_73_35_curated
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase id=4621854 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_603_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14256..15032
DNA (777bp) protein (259aa)
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Transcriptional repressor NrdR id=3366426 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
nrdR; transcriptional regulator NrdR
13_1_40cm_2_scaffold_603_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

15101..16918
DNA (1818bp) protein (606aa)
cobalamin B12-binding/Radical SAM family protein id=14627517 bin=bin7_NC10_sister species=Leptospirillum ferriphilum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
cobalamin B12-binding/Radical SAM family protein Tax=CSP1_6_Rokubacteria
cobalamin B12-binding/Radical SAM family
13_1_40cm_2_scaffold_603_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17088..17771)
DNA (684bp) protein (228aa)
Orotate phosphoribosyltransferase (OPRT) (OPRTase) (EC:2.4.2.10) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Orotate phosphoribosyltransferase (OPRT) (OPRTase) (EC:2.4.2.10)
Putative Orotate phosphoribosyltransferase (OPRT) (OPRTase) id=2982073 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_603_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17850..18524
DNA (675bp) protein (225aa)
peptidase M22, glycoprotease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
peptidase M22, glycoprotease id=14627521 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
peptidase M22, glycoprotease
13_1_40cm_2_scaffold_603_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18508..18978
DNA (471bp) protein (157aa)
ribosomal-protein-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rimI; putative ribosomal-protein-alanine acetyltransferase RimI (EC:2.3.1.128)
Ribosomal-protein-alanine acetyltransferase id=2982082 bin=GWC2_Methylomirabilis_70_16 species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Displaying 18 items

View Taxonomy