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13_1_40cm_2_scaffold_6068

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_6068_1
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(3..425)
DNA (423bp) protein (141aa)
amidase (EC:3.5.1.4)
Putative amidase n=1 Tax=uncultured marine microorganism HF4000_APKG10H12 RepID=B3TC69_9ZZZZ
gatA2; amidase Tax=RBG_13_Acidobacteria_68_16_curated
13_1_40cm_2_scaffold_6068_2
CSP1_5_NC10, NC10, Bacteria

Not on your lists

601..2262
DNA (1662bp) protein (554aa)
diguanylate cyclase id=14428813 bin=bin3_NC10 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10 rbh
diguanylate cyclase Tax=CSP1_5_NC10
diguanylate cyclase
13_1_40cm_2_scaffold_6068_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2272..3024)
DNA (753bp) protein (251aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein id=14428812 bin=bin3_NC10 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
13_1_40cm_2_scaffold_6068_4
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3134..3715)
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Marinobacterium rhizophilum RepID=UPI00035DFEFF
CHRD domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
CHRD domain protein
13_1_40cm_2_scaffold_6068_5
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3780..5333)
DNA (1554bp) protein (518aa)
ligB; ATP-dependent DNA ligase (EC:6.5.1.1)
Probable DNA ligase {ECO:0000256|HAMAP-Rule:MF_00407}; EC=6.5.1.1 {ECO:0000256|HAMAP-Rule:MF_00407};; Polydeoxyribonucleotide synthase [ATP] {ECO:0000256|HAMAP-Rule:MF_00407}; TaxID=1254432 species="B
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003640147 rbh
13_1_40cm_2_scaffold_6068_6
Lyngbya aestuarii, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

5948..6370
DNA (423bp) protein (141aa)
Transposase IS200 like family protein n=1 Tax=Lyngbya aestuarii BL J RepID=U7QC26_9CYAN
Transposase IS200 like family protein {ECO:0000313|EMBL:ERT04575.1}; TaxID=1348334 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya aestuarii BL J.;
transposase IS200-family protein
13_1_40cm_2_scaffold_6068_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(7080..9305)
DNA (2226bp) protein (742aa)
Beta-glucosidase-like glycosyl hydrolase {ECO:0000313|EMBL:CDM64118.1}; EC=3.2.1.21 {ECO:0000313|EMBL:CDM64118.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomo
beta-glucosidase (EC:3.2.1.21)
Glycoside hydrolase family 3 protein id=2725679 bin=GWC2_Ignavibacteria_56_12 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
13_1_40cm_2_scaffold_6068_8
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9434..10654
DNA (1221bp) protein (407aa)
TonB-dependent receptor plug n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KRM7_HALH1
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:AEE49016.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomen
13_1_40cm_2_scaffold_6068_9
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10756..12396
DNA (1641bp) protein (547aa)
TonB-dependent receptor plug n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KRM7_HALH1
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:AEE49016.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomen
13_1_40cm_2_scaffold_6068_10
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12435..14306
DNA (1872bp) protein (624aa)
hypothetical protein n=1 Tax=Lewinella persica RepID=UPI00037AA626
RagB/SusD domain-containing protein
RagB/SusD domain-containing protein {ECO:0000313|EMBL:AEE49017.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Hal
13_1_40cm_2_scaffold_6068_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14425..14787
DNA (363bp) protein (121aa)
TonB-dependent receptor plug n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T6X8_NIAKG
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:AEV98999.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" sourc
13_1_40cm_2_scaffold_6068_12
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

15047..16792
DNA (1746bp) protein (582aa)
Fibronectin type III domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNI0_OPITP
fibronectin type III domain-containing protein Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
fibronectin type III domain-containing protein
13_1_40cm_2_scaffold_6068_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

16783..16914
DNA (132bp) protein (44aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036AD2F0
Uncharacterized protein {ECO:0000313|EMBL:CDM64122.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
fibronectin type III domain-containing protein
13_1_40cm_2_scaffold_6068_14
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17450..18289
DNA (840bp) protein (280aa)
UPI00026CBFC3 related cluster n=1 Tax=unknown RepID=UPI00026CBFC3 id=5223543 bin=16ft_combo_ws3_JS1 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Uncharacterized protein {ECO:0000313|EMBL:KFE71978.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyal
Protein of unknown function DUF2329
13_1_40cm_2_scaffold_6068_15
unknown

Not on your lists

comp(18311..18625)
DNA (315bp) protein (105aa)

This feature has no annotations

13_1_40cm_2_scaffold_6068_16
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

18924..19559
DNA (636bp) protein (212aa)
LuxR family two component transcriptional regulator Tax=RBG_16_Zixibacteria_53_22_curated
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain id=4442179 bin=GWF2_Melioribacter_38_21 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
DNA-binding response regulator, LuxR family
13_1_40cm_2_scaffold_6068_17
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19711..21267
DNA (1557bp) protein (519aa)
Radical SAM domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T982_NIAKG
radical SAM protein Tax=RBG_13_Deltaproteobacteria_52_11_curated
Elongator protein 3/MiaB/NifB
13_1_40cm_2_scaffold_6068_18
unknown

Not on your lists

comp(21284..21643)
DNA (360bp) protein (120aa)

This feature has no annotations

13_1_40cm_2_scaffold_6068_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(21743..23599)
DNA (1857bp) protein (619aa)
putative ABC transporter ATP-binding/permease protein; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Putative ABC transporter ATP-binding/permease protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE60_GEMAT id=5223291 bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter transmembrane region
13_1_40cm_2_scaffold_6068_20
S_OP1_64_32, KB1, Bacteria

Not on your lists

comp(23702..24025)
DNA (324bp) protein (108aa)
Chorismate mutase n=2 Tax=Rhodothermus marinus RepID=D0ME02_RHOM4
Chorismate mutase Tax=S_OP1_64_32
chorismate mutase, type II
13_1_40cm_2_scaffold_6068_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(24215..26239)
DNA (2025bp) protein (675aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGC6_9BACT rbh
PAS/PAC sensor signal transduction histidine kinase
Multi-sensor signal transduction histidine kinase {ECO:0000313|EMBL:EEF60977.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; P
Displaying 21 items

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