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13_1_40cm_2_scaffold_6569

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_6569_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1..1053
DNA (1053bp) protein (351aa)
lipid-A-disaccharide synthase (EC:2.4.1.182); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] Tax=GWA2_Rokubacteria_73_35_curated
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130)
Tetraacyldisaccharide 4'-kinase id=3956947 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_6569_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1050..2042
DNA (993bp) protein (331aa)
lipopolysaccharide heptosyltransferase II; K02843 heptosyltransferase II [EC:2.4.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ADP-heptose--LPS heptosyltransferase II (EC:2.-.-.-)
ADP-heptose--LPS heptosyltransferase II (Modular protein) id=3956942 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_6569_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2039..3157
DNA (1119bp) protein (373aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=3956940 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_40cm_2_scaffold_6569_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3154..4278
DNA (1125bp) protein (375aa)
putative phosphatidylinositol alpha-mannosyltransferase (EC:2.4.1.57) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=2909548 bin=GWC2_Methylomirabilis_70_24 species=Burkholderia phytofirmans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
group 1 glycosyl transferase
13_1_40cm_2_scaffold_6569_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4275..5351
DNA (1077bp) protein (359aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase, group 1 id=3956935 bin=GWA2_Methylomirabilis_73_35 species=Oscillatoria sp. PCC 6506 genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Glycosyl transferase, group 1
13_1_40cm_2_scaffold_6569_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5563..6672
DNA (1110bp) protein (370aa)
group 1 glycosyl transferase; K02844 UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=3956931 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_40cm_2_scaffold_6569_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6728..7282
DNA (555bp) protein (185aa)
histidinol-phosphate phosphatase family protein/HAD-superfamily hydrolase (EC:3.1.3.-); K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] Tax=RIFCSPLOWO2_02_FULL_Rok
histidinol-phosphate phosphatase family protein/HAD-superfamily hydrolase (EC:3.1.3.-)
D,D-heptose 1,7-bisphosphate phosphatase id=3956928 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_6569_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7721..8236
DNA (516bp) protein (172aa)
D-beta-D-heptose 7-phosphate kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PfkB domain protein id=4143312 bin=GWF2_Methylomirabilis_70_14 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-beta-D-heptose 7-phosphate kinase
13_1_40cm_2_scaffold_6569_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8343..8807
DNA (465bp) protein (155aa)
cytidyltransferase-related domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cytidyltransferase-related domain protein id=3333947 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytidyltransferase-related domain-containing protein
13_1_40cm_2_scaffold_6569_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8804..9853
DNA (1050bp) protein (350aa)
ADP-heptose--LPS heptosyltransferase; K02841 heptosyltransferase I [EC:2.4.-.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ADP-heptose:LPS heptosyltransferase id=4143308 bin=GWF2_Methylomirabilis_70_14 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ADP-heptose--LPS heptosyltransferase
13_1_40cm_2_scaffold_6569_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9850..10626
DNA (777bp) protein (259aa)
family 2 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Glycosyl transferase family 2 id=3333943 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 2 glycosyl transferase
13_1_40cm_2_scaffold_6569_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10626..11618
DNA (993bp) protein (331aa)
trpS; tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS) (EC:6.1.1.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
trpS; tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS) (EC:6.1.1.2)
Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS) id=3333940 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_40cm_2_scaffold_6569_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11615..12403
DNA (789bp) protein (263aa)
chromosome segregation and condensation protein ScpA; K05896 segregation and condensation protein A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=3333777 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
segregation and condensation protein A
13_1_40cm_2_scaffold_6569_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12387..12992
DNA (606bp) protein (202aa)
scpB; Segregation and condensation protein B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Segregation and condensation protein B id=3333773 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
scpB; Segregation and condensation protein B
13_1_40cm_2_scaffold_6569_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13099..13671
DNA (573bp) protein (191aa)
pseudouridine synthase; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Pseudouridine synthase id=3333767 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pseudouridine synthase
13_1_40cm_2_scaffold_6569_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13741..14802
DNA (1062bp) protein (354aa)
pheA; chorismate mutase/prephenate dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chorismate mutase/prephenate dehydratase id=3333763 bin=GWA2_Methylomirabilis_73_35 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pheA; chorismate mutase
13_1_40cm_2_scaffold_6569_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

14813..15925
DNA (1113bp) protein (371aa)
hisC; histidinol-phosphate aminotransferase (EC:2.6.1.9) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
histidinol-phosphate aminotransferase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] id=14627229 bin=bin7_NC10_sister species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
histidinol-phosphate aminotransferase (EC:2.6.1.9)
13_1_40cm_2_scaffold_6569_18
unknown

Not on your lists

comp(15775..16347)
DNA (573bp) protein (191aa)

This feature has no annotations

13_1_40cm_2_scaffold_6569_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16376..16714
DNA (339bp) protein (113aa)
prephenate dehydrogenase (EC:1.3.1.12); K04517 prephenate dehydrogenase [EC:1.3.1.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase family protein id=4143295 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_6569_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16711..18024
DNA (1314bp) protein (438aa)
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] id=14627231 bin=bin7_NC10_sister species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase AroA (EC:2.5.1.19)
13_1_40cm_2_scaffold_6569_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18030..18407
DNA (378bp) protein (126aa)
cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cytidylate kinase n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EEF9_THECK
cytidylate kinase
13_1_40cm_2_scaffold_6569_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18404..19351
DNA (948bp) protein (316aa)
cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
1-acyl-sn-glycerol-3-phosphate acyltransferase id=14627233 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
1-acyl-sn-glycerol-3-phosphate acyltransferase
13_1_40cm_2_scaffold_6569_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


19374..21092
DNA (1719bp) protein (573aa)
rpsA; 30S ribosomal protein S1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S1 id=4941223 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
rpsA; 30S ribosomal protein S1
13_1_40cm_2_scaffold_6569_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

21061..21981
DNA (921bp) protein (307aa)
Signal peptide peptidase SppA, 36K type (EC:3.1.3.26) Tax=GWA2_Rokubacteria_73_35_curated
peptidase S49, putative signal peptide peptidase SppA (EC:3.4.21.-); K04773 protease IV [EC:3.4.21.-] id=14627235 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10 rbh
Signal peptide peptidase SppA, 36K type (EC:3.1.3.26)
13_1_40cm_2_scaffold_6569_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22202..22477
DNA (276bp) protein (92aa)
hupA1; DNA-binding protein HU 1; K05788 integration host factor subunit beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integration host factor, beta subunit, putative id=3360720 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hupA1; DNA-binding protein HU 1
13_1_40cm_2_scaffold_6569_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22512..22994
DNA (483bp) protein (161aa)
histidine triad (HIT) protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidine triad (HIT) protein id=3360718 bin=GWA2_Methylomirabilis_73_35 species=Thermococcus sp. CL1 genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine triad (HIT) protein
13_1_40cm_2_scaffold_6569_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22987..25620
DNA (2634bp) protein (878aa)
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA mismatch repair protein MutS id=4430853 bin=GWC2_Methylomirabilis_70_24 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
DNA mismatch repair protein MutS
13_1_40cm_2_scaffold_6569_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

25658..26455
DNA (798bp) protein (266aa)
mutL; DNA mismatch repair protein; K03572 DNA mismatch repair protein MutL Tax=GWA2_Rokubacteria_73_35_curated
DNA mismatch repair protein MutL id=4555220 bin=GWF2_Methylomirabilis_70_14 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA mismatch repair protein MutL
Displaying 28 items

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