ggKbase home page

13_1_40cm_2_scaffold_641

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_641_1
unknown

Not on your lists

2..331
DNA (330bp) protein (110aa)

This feature has no annotations

13_1_40cm_2_scaffold_641_2
unknown

Not on your lists

316..1275
DNA (960bp) protein (320aa)

This feature has no annotations

13_1_40cm_2_scaffold_641_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

1466..3100
DNA (1635bp) protein (545aa)
dnaX; DNA polymerase III gamma and tau subunit (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA polymerase III gamma and tau subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7E4_GEMAT
DNA polymerase III, subunits gamma and tau
13_1_40cm_2_scaffold_641_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

3137..3460
DNA (324bp) protein (108aa)
Nucleoid-associated protein GAU_1113 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=Y1113_GEMAT
hypothetical protein; K09747 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
UPF0133 protein ybaB
13_1_40cm_2_scaffold_641_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

3507..3977
DNA (471bp) protein (157aa)
Recombination protein RecR n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7E6_GEMAT
recR; recombination protein RecR; K06187 recombination protein RecR Tax=GWC2_Gemmatimonadetes_71_10_curated
recR; recombination protein RecR
13_1_40cm_2_scaffold_641_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

3992..4474
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7E7_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Roadblock/LC7 family protein
13_1_40cm_2_scaffold_641_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

4487..5161
DNA (675bp) protein (225aa)
Gliding motility protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7E8_GEMAT
gliding motility protein; K06883 Tax=RBG_16_Gemmatimonadetes_66_8_curated
gliding motility protein
13_1_40cm_2_scaffold_641_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

5173..5826
DNA (654bp) protein (218aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] Tax=GWC2_Gemmatimonadetes_
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7E9_GEMAT
13_1_40cm_2_scaffold_641_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

5823..7064
DNA (1242bp) protein (414aa)
CinA-like protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=CINAL_GEMAT
CinA-like protein; K03742 competence/damage-inducible protein CinA Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
CinA-like protein
13_1_40cm_2_scaffold_641_10
Leptonema illini, Leptonema, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

7061..7837
DNA (777bp) protein (259aa)
Alpha/beta hydrolase fold containing protein n=1 Tax=Leptonema illini DSM 21528 RepID=H2CC43_9LEPT
Alpha/beta hydrolase fold containing protein {ECO:0000313|EMBL:EHQ05272.1}; TaxID=929563 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptonema.;" source="Leptonema illini DSM 21528
pldB; lysophospholipase
13_1_40cm_2_scaffold_641_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

7905..8513
DNA (609bp) protein (203aa)
Protein GrpE n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7F5_GEMAT
grpE; GrpE protein; K03687 molecular chaperone GrpE Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Protein grpE
13_1_40cm_2_scaffold_641_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

8513..9601
DNA (1089bp) protein (363aa)
Chaperone protein DnaJ n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7F6_GEMAT
dnaJ; chaperone protein DnaJ; K03686 molecular chaperone DnaJ Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
dnaJ; chaperone protein DnaJ
13_1_40cm_2_scaffold_641_trna_1
unknown

Not on your lists

9644..9716
DNA (73bp)
transferRNA
13_1_40cm_2_scaffold_641_13
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(9730..11070)
DNA (1341bp) protein (447aa)
glucuronate isomerase (EC:5.3.1.12)
Uronate isomerase {ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|SAAS:SAAS00013438};; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
Glucuronate isomerase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJM9_RHOMR
13_1_40cm_2_scaffold_641_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(11143..12456)
DNA (1314bp) protein (438aa)
Oxidoreductase domain protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KYR9_HALH1 rbh
oxidoreductase domain protein
Oxidoreductase domain protein {ECO:0000313|EMBL:AHG89161.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_641_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12453..13217)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Mesoflavibacter zeaxanthinifaciens RepID=UPI000255B6B8
protein of unknown function DUF1080
Uncharacterized protein {ECO:0000313|EMBL:AHG93132.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_641_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13214..14473)
DNA (1260bp) protein (420aa)
Anion:cation symporter family protein (Fragment) n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9D8_9GAMM
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AHG87912.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_641_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14470..15501)
DNA (1032bp) protein (344aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:00002
hypothetical protein n=1 Tax=Paenibacillus terrigena RepID=UPI00037C2CFC
Mannonate dehydratase
13_1_40cm_2_scaffold_641_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(15498..16478)
DNA (981bp) protein (327aa)
PfkB domain-containing protein; K00874 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PfkB domain-containing protein; K00874 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] id=12556857 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PfkB domain-containing protein
13_1_40cm_2_scaffold_641_19
RBG_16_Aminicenantes_66_30_curated, Aminicenantes, Bacteria

Not on your lists

comp(16475..17119)
DNA (645bp) protein (215aa)
2-dehydro-3-deoxyphosphogluconate aldolase id=17503674 bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Marinimicrobia tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
2-dehydro-3-deoxyphosphogluconate aldolase Tax=RBG_16_Aminicenantes_66_30_curated
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
13_1_40cm_2_scaffold_641_20
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17112..18353)
DNA (1242bp) protein (414aa)
Tagaturonate reductase {ECO:0000313|EMBL:AEE52242.1}; EC=1.1.1.58 {ECO:0000313|EMBL:AEE52242.1};; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; H
Tagaturonate reductase n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KQV7_HALH1
Tagaturonate reductase
13_1_40cm_2_scaffold_641_21
Calothrix parietina, Calothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

18466..18912
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Calothrix sp. PCC 6303 RepID=K9V5V7_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ03079.1}; TaxID=1170562 species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix sp. PCC 6303.;"
13_1_40cm_2_scaffold_641_22
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

19031..21208
DNA (2178bp) protein (726aa)
Serine/threonine protein kinase n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LFQ2_9BACT
protein kinase
Protein kinase {ECO:0000313|EMBL:AHG92755.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_641_23
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(21259..21588)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MQ21_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KDA53852.1}; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
hypothetical protein
Displaying 24 items

View Taxonomy