ggKbase home page

13_1_40cm_2_scaffold_7188

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_7188_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(3..623)
DNA (621bp) protein (207aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322, ECO:0000256|RuleB
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHU9_CHLTF
13_1_40cm_2_scaffold_7188_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

946..1182
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UY44_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENN85686.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sourc
13_1_40cm_2_scaffold_7188_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(1419..3752)
DNA (2334bp) protein (778aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHU8_CHLTF
13_1_40cm_2_scaffold_7188_4
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4054..4713
DNA (660bp) protein (220aa)
hypothetical protein Tax=GWF1_Rhodobacteraceae_65_7_curated
13_1_40cm_2_scaffold_7188_5
unknown

Not on your lists

5140..5628
DNA (489bp) protein (163aa)

This feature has no annotations

13_1_40cm_2_scaffold_7188_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(6110..6502)
DNA (393bp) protein (131aa)
50S ribosomal protein L7/L12 n=1 Tax=Persephonella marina (strain DSM 14350 / EX-H1) RepID=RL7_PERMH
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rplL; 50S ribosomal protein L7/L12
13_1_40cm_2_scaffold_7188_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(6752..7276)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036DA8BB
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rplJ; 50S ribosomal protein L10
13_1_40cm_2_scaffold_7188_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(7286..7981)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SBQ7_9BACT rbh
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
50S ribosomal protein L1
13_1_40cm_2_scaffold_7188_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(8118..8543)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Thioalkalivibrio sp. ALJT RepID=UPI000371A8A4
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomon
50S ribosomal protein L11
13_1_40cm_2_scaffold_7188_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(8543..9103)
DNA (561bp) protein (187aa)
Transcription termination/antitermination protein NusG n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SBQ9_9BACT
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas
transcription antitermination protein nusG
13_1_40cm_2_scaffold_7188_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(9120..9416)
DNA (297bp) protein (99aa)
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE id=24440750 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
preprotein translocase subunit SecE
13_1_40cm_2_scaffold_7188_trna_5
unknown

Not on your lists

comp(9450..9522)
DNA (73bp)
transferRNA
13_1_40cm_2_scaffold_7188_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(9613..9765)
DNA (153bp) protein (51aa)
50S ribosomal protein L33 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=RL33_KORVE
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpmG; 50S ribosomal protein L33
13_1_40cm_2_scaffold_7188_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(9867..10997)
DNA (1131bp) protein (377aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu n=2 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHU1_CHLTF
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subd
13_1_40cm_2_scaffold_7188_trna_4
unknown

Not on your lists

comp(11107..11178)
DNA (72bp)
transferRNA
13_1_40cm_2_scaffold_7188_trna_3
unknown

Not on your lists

comp(11215..11287)
DNA (73bp)
transferRNA
13_1_40cm_2_scaffold_7188_trna_2
unknown

Not on your lists

comp(11368..11454)
DNA (87bp)
transferRNA
13_1_40cm_2_scaffold_7188_trna_1
unknown

Not on your lists

comp(11645..11717)
DNA (73bp)
transferRNA
13_1_40cm_2_scaffold_7188_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


11887..12342
DNA (456bp) protein (152aa)
50S ribosomal protein L13 n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=RL13_ACIC5
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomon
rplM; 50S ribosomal protein L13
13_1_40cm_2_scaffold_7188_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


12365..12757
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGN9_CHLTF
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomona
30S ribosomal protein S9
13_1_40cm_2_scaffold_7188_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


12960..13871
DNA (912bp) protein (304aa)
30S ribosomal protein S2 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=RS2_KORVE
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsB; 30S ribosomal protein S2
13_1_40cm_2_scaffold_7188_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

14036..14701
DNA (666bp) protein (222aa)
Elongation factor Ts n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KNR8_9FIRM
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subd
translation elongation factor Ts
13_1_40cm_2_scaffold_7188_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

14803..15540
DNA (738bp) protein (246aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] id=15192304 bin=GWC2_NOV_55_46 species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
pyrH; uridylate kinase
13_1_40cm_2_scaffold_7188_19
unknown

Not on your lists

15601..15747
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_40cm_2_scaffold_7188_20
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

15778..16338
DNA (561bp) protein (187aa)
Ribosome-recycling factor n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGN5_CHLTF
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=454194 species="Bacteria;
ribosome recycling factor
13_1_40cm_2_scaffold_7188_21
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

16573..17817
DNA (1245bp) protein (415aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM65585.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Putative uncharacterized protein id=4152250 bin=GWC2_Planctomycete_KSU_39_26 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
hypothetical protein
Displaying 26 items

View Taxonomy