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13_1_40cm_2_scaffold_8989

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_8989_1
CSP1_5_NC10, NC10, Bacteria

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comp(3..485)
DNA (483bp) protein (161aa)
fumarase (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2] id=14429912 bin=bin3_NC10 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
fumarase (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2] Tax=CSP1_5_NC10
fumarate lyase
13_1_40cm_2_scaffold_8989_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

793..1194
DNA (402bp) protein (134aa)
PilT protein domain protein n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9V9Q3_9CYAN
PilT protein domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PilT protein domain protein
13_1_40cm_2_scaffold_8989_3
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(1209..1850)
DNA (642bp) protein (214aa)
isochorismatase hydrolase; K08281 nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XWY2_SORCE
hypothetical protein
13_1_40cm_2_scaffold_8989_4

Not on your lists

comp(1900..2313)
DNA (414bp) protein (138aa)
Hypothetical conserved protein n=1 Tax=uncultured prokaryote RepID=H5SI26_9ZZZZ
Hypothetical conserved protein {ECO:0000313|EMBL:BAL55812.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
methylmalonyl-CoA epimerase
13_1_40cm_2_scaffold_8989_5
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2386..3150)
DNA (765bp) protein (255aa)
cation diffusion facilitator family transporter Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
cation diffusion facilitator family transporter id=1842097 bin=GWD2_Deltaproteobacteria_55_8 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Co/Zn/Cd efflux system protein
13_1_40cm_2_scaffold_8989_6
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3163..3531)
DNA (369bp) protein (123aa)
apt; adenine phosphoribosyltransferase; K00759 adenine phosphoribosyltransferase [EC:2.4.2.7] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=APT_SOLUE
13_1_40cm_2_scaffold_8989_7
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3641..4351)
DNA (711bp) protein (237aa)
peptidase M23B Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Peptidase M23B id=2009439 bin=GWB2_Proteobacteria_55_19 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
cell wall endopeptidase
13_1_40cm_2_scaffold_8989_8
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4356..5012)
DNA (657bp) protein (219aa)
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77); K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NHC2_DESAR
13_1_40cm_2_scaffold_8989_9
R_Deltaproteobacteria_44_9, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5014..5778)
DNA (765bp) protein (255aa)
surE; 5'-nucleotidase surE (Nucleoside 5'-monophosphate phosphohydrolase)(survival protein, protein damage control) (EC:3.1.3.5) Tax=RIFCSPLOWO2_02_Deltaproteobacteria_44_9_curated
surE; stationary phase survival protein SurE; K03787 5'-nucleotidase [EC:3.1.3.5] id=14623172 bin=bin5_DeltaP species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria rbh
surE; 5'(3')-nucleotidase/polyphosphatase
13_1_40cm_2_scaffold_8989_trna_1
unknown

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comp(5868..5941)
DNA (74bp)
transferRNA
13_1_40cm_2_scaffold_8989_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6270..6767
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=A5H1R2_9BACT
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
13_1_40cm_2_scaffold_8989_11
unknown

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comp(6581..6961)
DNA (381bp) protein (127aa)

This feature has no annotations

13_1_40cm_2_scaffold_8989_12
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(7142..7477)
DNA (336bp) protein (112aa)
MerR family transcriptional regulator Tax=RBG_16_Acidobacteria_68_9_curated
MerR family transcriptional regulator id=110325 bin=ACD73 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=ACD73 organism_group=Proteobacteria organism_desc=Unknown
MerR family transcriptional regulator
13_1_40cm_2_scaffold_8989_13
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7474..7788)
DNA (315bp) protein (105aa)
Integration host factor subunit alpha n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LY92_HALO1
histone family protein DNA-binding protein; K04764 integration host factor subunit alpha Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
integration host factor subunit alpha
13_1_40cm_2_scaffold_8989_14
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7799..9106)
DNA (1308bp) protein (436aa)
phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI00037AAA04
pheT; phenylalanyl-tRNA synthetase subunit beta
13_1_40cm_2_scaffold_8989_15
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9070..10176)
DNA (1107bp) protein (369aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000255|HAMAP-Rule:MF_00283}; EC=6.1.1.20 {ECO:0000255|HAMAP-Rule:MF_00283};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000255|HAMAP-Rule:MF_00283};
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=SYFB_MOOTA
13_1_40cm_2_scaffold_8989_16
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10183..11229)
DNA (1047bp) protein (349aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Phenylalanine--tRNA ligase alpha subunit id=2049417 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
pheS; phenylalanyl-tRNA synthetase subunit alpha
13_1_40cm_2_scaffold_8989_17
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists


comp(11230..11601)
DNA (372bp) protein (124aa)
rplT; 50S ribosomal protein L20 id=14627868 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rplT; 50S ribosomal protein L20 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
rplT; 50S ribosomal protein L20
13_1_40cm_2_scaffold_8989_18
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11616..11813)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=4 Tax=Roseburia RepID=D4KQM1_9FIRM
LSU ribosomal protein l35p; K02916 large subunit ribosomal protein L35 Tax=RBG_13_Deltaproteobacteria_65_10_curated
50S ribosomal protein L35
13_1_40cm_2_scaffold_8989_19
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11826..12281)
DNA (456bp) protein (152aa)
translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=GWC2_Pelobacteraceae_58_13_curated
Translation initiation factor IF-3 id=3407525 bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
translation initiation factor IF-3
13_1_40cm_2_scaffold_8989_20
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12338..13285)
DNA (948bp) protein (316aa)
thrS; threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=GWD2_Deltaproteobacteria_55_8_curated
Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase id=2049408 bin=GWD2_Deltaproteobacteria_55_8 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Displaying 21 items

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