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13_1_40cm_2_scaffold_10681

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_10681_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2..916
DNA (915bp) protein (305aa)
60 kDa chaperonin id=2197767 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
groL; 60 kDa chaperonin (Protein Cpn60) (groEL protein) Tax=GWA2_Rokubacteria_73_35_curated
groEL; molecular chaperone GroEL
13_1_40cm_2_scaffold_10681_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


1165..1473
DNA (309bp) protein (103aa)
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=GWA2_Rokubacteria_73_35_curated
30S ribosomal protein S6 id=2197766 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsF; 30S ribosomal protein S6
13_1_40cm_2_scaffold_10681_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1520..1852
DNA (333bp) protein (111aa)
ssb; Single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein Tax=GWA2_Rokubacteria_73_35_curated
Single-stranded DNA-binding protein id=2197765 bin=GWA2_Methylomirabilis_73_35 species=Methylacidiphilum infernorum genus=Methylacidiphilum taxon_order=Methylacidiphilales taxon_class=unknown phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_10681_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


1928..2125
DNA (198bp) protein (66aa)
30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 Tax=GWA2_Rokubacteria_73_35_curated
rpsR; 30S ribosomal protein S18 id=14428826 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
rpsR; 30S ribosomal protein S18
13_1_40cm_2_scaffold_10681_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2136..2579
DNA (444bp) protein (148aa)
50S ribosomal protein L9 id=2197764 bin=GWA2_Methylomirabilis_73_35 species=Desulfosporosinus sp. OT genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L9 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L9
13_1_40cm_2_scaffold_10681_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2798..5215
DNA (2418bp) protein (806aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] Tax=GWA2_Rokubacteria_73_35_curated
dnaB; replicative DNA helicase (EC:3.6.4.12)
Replicative DNA helicase id=2197763 bin=GWA2_Methylomirabilis_73_35 species=Allochromatium vinosum genus=Allochromatium taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_40cm_2_scaffold_10681_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5249..7069
DNA (1821bp) protein (607aa)
amino acid permease-associated protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Amino acid permease-associated region id=2197762 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_10681_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7198..8118
DNA (921bp) protein (307aa)
DNA-3-methyladenine glycosylase II (EC:3.2.2.21); K01247 DNA-3-methyladenine glycosylase II [EC:3.2.2.21] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA-3-methyladenine glycosylase II (EC:3.2.2.21)
DNA-3-methyladenine glycosylase II id=2197712 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_10681_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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8115..8441
DNA (327bp) protein (109aa)
Putative uncharacterized protein id=2197711 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_2_scaffold_10681_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8673..9791
DNA (1119bp) protein (373aa)
EmrB/QacA family drug resistance transporter id=2197710 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
drug resistance transporter, EmrB/QacA subfamily Tax=GWA2_Rokubacteria_73_35_curated
Major facilitator permease
13_1_40cm_2_scaffold_10681_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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9795..10301
DNA (507bp) protein (169aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=2197709 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_10681_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10324..10509
DNA (186bp) protein (62aa)
Alkylhydroperoxidase like protein, AhpD family Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alkylhydroperoxidase like protein, AhpD family id=2197708 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_10681_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

10674..11069
DNA (396bp) protein (132aa)
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein id=14627149 bin=bin7_NC10_sister species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
13_1_40cm_2_scaffold_10681_14
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(10892..12508)
DNA (1617bp) protein (539aa)
Putative ATP-binding component of ABC transporter n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZDZ1_9ACTN
Putative ATP-binding component of ABC transporter {ECO:0000313|EMBL:CDA37055.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; envi
hypothetical protein
13_1_40cm_2_scaffold_10681_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12810..13031
DNA (222bp) protein (74aa)
ABC transporter-like protein; K06158 ATP-binding cassette, subfamily F, member 3 Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter related id=2197706 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Eggerthella taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_10681_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13024..13329
DNA (306bp) protein (102aa)
HNH endonuclease family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
HNH endonuclease family protein id=2197705 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HNH endonuclease
13_1_40cm_2_scaffold_10681_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13461..13778
DNA (318bp) protein (106aa)
helix-hairpin-helix repeat-containing competence protein ComEA; K02237 competence protein ComEA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Competence protein ComEA helix-hairpin-helix repeat protein id=2197704 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
helix-hairpin-helix repeat-containing competence protein ComEA
13_1_40cm_2_scaffold_10681_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14218..15348)
DNA (1131bp) protein (377aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] Tax=GWA2_Rokubacteria_73_35_curated
DEAD/DEAH box helicase domain protein id=2197702 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
DEAD/DEAH box helicase
13_1_40cm_2_scaffold_10681_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15424..15627)
DNA (204bp) protein (68aa)
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) id=14627158 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
cold-shock DNA-binding domain-containing protein
13_1_40cm_2_scaffold_10681_20
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(15832..16785)
DNA (954bp) protein (318aa)
thiol-disulfide oxidoreductase domain-containing protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
thiol-disulfide oxidoreductase domain-containing protein id=14627159 bin=bin7_NC10_sister species=Sulfitobacter sp. EE-36 genus=Sulfitobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
thiol-disulfide oxidoreductase domain-containing protein
Displaying 20 items

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