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13_1_40cm_2_scaffold_3696_10

Organism: 13_1_40CM_2_Rokubacteria_70_45

partial RP 39 / 55 MC: 1 BSCG 39 / 51 ASCG 11 / 38
Location: 6110..7030

Top 3 Functional Annotations

Value Algorithm Source
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 76.8
  • Coverage: 306.0
  • Bit_score: 453
  • Evalue 1.80e-124
RNA polymerase sigma factor id=4853978 bin=GWA2_Methylomirabilis_73_35 species=Selenomonas noxia genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis similarity UNIREF
DB: UNIREF100
  • Identity: 69.2
  • Coverage: 305.0
  • Bit_score: 393
  • Evalue 2.10e-106
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 52.3
  • Coverage: 281.0
  • Bit_score: 281
  • Evalue 3.20e-73

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Taxonomy

R_Rokubacteria_73_56 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 921
ATGAGTGACGAGGCCCACGAGGTCCTTCCCGACGAGCCGCTCGACACGCTGCCCGACGAGGTCGACGAGGACGTTCGGGACGAGACACGCGAGACCAGCCGCGAGAACCTCCGCGTCTACCTGAAGGAGATCGCGCGGATCCCGCTCCTGACGCGCGAGCAGGAGGTGGAGCTCGCGCGGCGCGCCCGCACCGGCGACGAGGCCGCGAAGGCGAAGCTCATCGAGTCGAATCTGCGCCTGGTCGTGCAGATCGCCCGCCGCTACCTGAACCGCGGCCTCCCGCTTCCCGACCTGATCGAGGAGGGAAACCTCGGGCTCCTGCGCGCCGTCGACAAGTTCGACGCCGAGCGCGGCACCCGTTTCTCGACCTATGCGGCGTGGTGGGTGCGCCAGGCCGTCGAGCGGGCGCTCGCGAACCAGGCGCGGACGATCCGCCTCCCGGTGCACGTCGAGCTGCTGCTCGGGCGCTACGCGCGCGAGCAGAAGCGACTGAGCCAGGAGCTCGGGCGCCCGCCGACGTCCGCCGAGCTGGCCGCCGCCCTCGGCATGGGCGTCGAGCAGGTGGAGGAGCTCGAGGAGATCAACCAGCGCCCGGTCTCGCTCGAGGCCCCGCTGAAGGACGGCGAGGGCCGTGTCGCCGACCTCGTCGCCGATCCGTCGCCCGGCCCGAGCGACGCCGTCGGCGCCCTGCTACGCGAGCGCGCAGACCTCGTGTCCGTCCTCGACGACCTCGCCGAGAATGAGCGCCTGGTCCTCCGCCGCCGCTTTGGCCTCGATAGCGAACCGCCCGAGACGCTCGAGGCGATCGGCCGGCGCCTGGGCCTCACCCGCGAGCGCGTCCGCCAGATCGAGGCCGGAGGCTTGCGGAAGCTGCGCGCGCTGCTCGCGGCGCGTGGCGTGGATCCGTCGGACTTCTTCTGA
PROTEIN sequence
Length: 307
MSDEAHEVLPDEPLDTLPDEVDEDVRDETRETSRENLRVYLKEIARIPLLTREQEVELARRARTGDEAAKAKLIESNLRLVVQIARRYLNRGLPLPDLIEEGNLGLLRAVDKFDAERGTRFSTYAAWWVRQAVERALANQARTIRLPVHVELLLGRYAREQKRLSQELGRPPTSAELAAALGMGVEQVEELEEINQRPVSLEAPLKDGEGRVADLVADPSPGPSDAVGALLRERADLVSVLDDLAENERLVLRRRFGLDSEPPETLEAIGRRLGLTRERVRQIEAGGLRKLRALLAARGVDPSDFF*