ggKbase home page

13_1_40cm_2_scaffold_3060

Search features with annotation key words

Displaying 15 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_3060_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(3..923)
DNA (921bp) protein (307aa)
metal-dependent phosphohydrolase Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Metal dependent phosphohydrolase id=4812132 bin=GWC2_Nitrospirae_57_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
metal dependent phosphohydrolase
13_1_40cm_2_scaffold_3060_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1034..1837)
DNA (804bp) protein (268aa)
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20); K01695 tryptophan synthase alpha chain [EC:4.2.1.20] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEV8_9BACT rbh
13_1_40cm_2_scaffold_3060_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1837..3036)
DNA (1200bp) protein (400aa)
trpB; tryptophan synthase subunit beta (EC:4.2.1.20); K01696 tryptophan synthase beta chain [EC:4.2.1.20] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
trpB; tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEV7_9BACT rbh
13_1_40cm_2_scaffold_3060_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(3103..3777)
DNA (675bp) protein (225aa)
trpF; n-(5'-phosphoribosyl)anthranilate isomerase (EC:5.3.1.24); K01817 phosphoribosylanthranilate isomerase [EC:5.3.1.24] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
trpF; n-(5'-phosphoribosyl)anthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEV6_9BACT
13_1_40cm_2_scaffold_3060_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(3796..4605)
DNA (810bp) protein (270aa)
trpC; indole-3-glycerol phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
trpC; indole-3-glycerol phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEV4_9BACT
13_1_40cm_2_scaffold_3060_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(4839..5849)
DNA (1011bp) protein (337aa)
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18); K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEV3_9BACT rbh
13_1_40cm_2_scaffold_3060_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(6019..6537)
DNA (519bp) protein (173aa)
trpG; anthranilate synthase, component II (EC:4.1.3.27); K01658 anthranilate synthase component II [EC:4.1.3.27] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
trpG; anthranilate synthase, component II (EC:4.1.3.27)
Anthranilate synthase, component II n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEV2_9BACT
13_1_40cm_2_scaffold_3060_8
unknown

Not on your lists

7625..7876
DNA (252bp) protein (84aa)

This feature has no annotations

13_1_40cm_2_scaffold_3060_9
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(8181..8789)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEV0_9BACT
hypothetical protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
hypothetical protein
13_1_40cm_2_scaffold_3060_10
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

9076..11118
DNA (2043bp) protein (681aa)
ligA; DNA ligase (NAD(+)) (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
ligA; DNA ligase (NAD(+)) (EC:6.5.1.2)
DNA ligase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEU7_9BACT rbh
13_1_40cm_2_scaffold_3060_11
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11135..12523
DNA (1389bp) protein (463aa)
Putative Diguanylate cyclase {ECO:0000313|EMBL:CCE23515.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CCE23515.1};; TaxID=1091494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methyloco
Putative Diguanylate cyclase n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4T1T3_META2
diguanylate cyclase
13_1_40cm_2_scaffold_3060_12
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(12497..13762)
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEU6_9BACT rbh
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_2_scaffold_3060_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(14022..14792)
DNA (771bp) protein (257aa)
Putative lipoprotein, RlpA-like n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEU5_9BACT
putative lipoprotein; K03642 rare lipoprotein A Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative lipoprotein
13_1_40cm_2_scaffold_3060_14
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(14797..15207)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEU4_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK41753.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_2_scaffold_3060_15
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(15383..16213)
DNA (831bp) protein (277aa)
nrdJ; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
nrdJ; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEK4_9BACT
Displaying 15 items

View Taxonomy