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13_1_40CM_2_Cyanobacteria_61_4

13_1_40CM_2_Bacteria_61_4
In projects: 13_1_40CM_2  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 3.89 Longest contig: 12.05 Kbp Bin length: 10.91 Mbp GC content: 60.78 %
Contigs count: 6823 Features count: 12402 rRNAs count: 0 tRNAs count: 19

Genome completeness

partial RP 7 / 55 MC: 1 BSCG 3 / 51 ASCG 6 / 38 MC: 1

Description

Just 3 single copy genes.-CB

Displaying items 451-500 of 6823 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_2_scaffold_170898
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 1965 bp 62.14 1.98 100.15
13_1_40cm_2_scaffold_92517
Species: Cyanothece sp. PCC 7425 (50%)
2 1980 bp 61.62 1.44 100.15
13_1_40cm_2_scaffold_209841
Species: Microcoleus sp. PCC 7113 (50%)
2 1324 bp 66.62 8.16 100.15
13_1_40cm_2_scaffold_207876
Species: Cyanothece sp. PCC 7425 (50%)
2 1330 bp 63.91 4.62 100.15
13_1_40cm_2_scaffold_100415
Species: Crocosphaera watsonii (66.67%)
3 2678 bp 55.23 13.51 100.15
13_1_40cm_2_scaffold_205178
Species: Lyngbya aestuarii (50%)
2 1339 bp 54.52 2.80 100.15
13_1_40cm_2_scaffold_204144
Species: Coleofasciculus chthonoplastes (50%)
2 1342 bp 54.17 3.35 100.15
13_1_40cm_2_scaffold_135806
Species: R_Betaproteobacteria_68_150 (50%)
2 2019 bp 63.65 4.68 100.15
13_1_40cm_2_scaffold_202451
Species: Pseudanabaena biceps (50%)
2 1348 bp 65.28 2.23 100.15
13_1_40cm_2_scaffold_418135
Species: Pyrinomonas methylaliphatogenes (100%)
2 1348 bp 60.61 5.98 100.15
13_1_40cm_2_scaffold_200591
Species: Microcystis aeruginosa (50%)
2 1354 bp 61.60 1.77 100.15
13_1_40cm_2_scaffold_199894
Species: bacterium UASB270 (50%)
2 1357 bp 65.59 2.21 100.15
13_1_40cm_2_scaffold_193630
Species: Cyanothece sp. PCC 7822 (50%)
2 1378 bp 56.75 4.03 100.15
13_1_40cm_2_scaffold_192538
Species: Scytonema millei (50%)
2 1381 bp 68.65 9.12 100.15
13_1_40cm_2_scaffold_191776
Species: Gloeocapsa sp. PCC 7428 (50%)
2 1384 bp 68.35 4.55 100.15
13_1_40cm_2_scaffold_81918
Species: Methanosarcina vacuolata (50%)
2 2100 bp 54.71 2.29 100.14
13_1_40cm_2_scaffold_185891
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 1405 bp 69.75 2.99 100.14
13_1_40cm_2_scaffold_181827
Species: RBG_13_WOR_2_41_10_curated (50%)
2 1420 bp 53.73 2.54 100.14
13_1_40cm_2_scaffold_135589
Species: Candidatus Methanoperedens nitroreducens (50%)
2 2139 bp 71.29 5.40 100.14
13_1_40cm_2_scaffold_174719
Species: Geitlerinema sp. PCC 7407 (50%)
2 1447 bp 66.41 14.31 100.14
13_1_40cm_2_scaffold_130149
Species: Chroococcidiopsis thermalis (50%)
2 2181 bp 68.96 60.45 100.14
13_1_40cm_2_scaffold_386439
Species: R_Gammaproteobacteria_38_11 (50%)
2 1459 bp 64.08 2.88 100.14
13_1_40cm_2_scaffold_169537
Species: Calothrix sp. PCC 7507 (50%)
2 1468 bp 62.40 1.33 100.14
13_1_40cm_2_scaffold_169681
Species: Gloeobacter violaceus (50%)
2 1468 bp 58.99 2.86 100.14
13_1_40cm_2_scaffold_167376
Species: Cyanothece sp. PCC 8801 (50%)
2 1477 bp 71.83 1.62 100.13
13_1_40cm_2_scaffold_165448
Species: RHI_Gammaproteobacteria_63_22 (50%)
2 1486 bp 58.21 3.43 100.13
13_1_40cm_2_scaffold_71786
Species: RBG_13_WOR_2_41_10_curated (50%)
2 2235 bp 55.57 1.34 100.13
13_1_40cm_2_scaffold_162700
Species: Thioploca ingrica (50%)
2 1498 bp 59.41 3.81 100.13
13_1_40cm_2_scaffold_466538
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated (50%)
2 1513 bp 63.71 2.18 100.13
13_1_40cm_2_scaffold_158662
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1516 bp 72.30 2.57 100.13
13_1_40cm_2_scaffold_148293
Species: Candidatus Methanoperedens nitroreducens (50%)
2 2277 bp 67.50 4.48 100.13
13_1_40cm_2_scaffold_155485
Species: Oligella urethralis (50%)
2 1531 bp 57.41 1.37 100.13
13_1_40cm_2_scaffold_151365
Species: Tolypothrix bouteillei (50%)
2 1552 bp 65.46 4.16 100.13
13_1_40cm_2_scaffold_150090
Species: Cylindrospermum stagnale (50%)
2 1558 bp 59.95 2.98 100.13
13_1_40cm_2_scaffold_147045
Species: Nostoc sp. PCC 7524 (50%)
2 1573 bp 70.06 3.34 100.13
13_1_40cm_2_scaffold_385224
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (100%)
2 1576 bp 73.03 5.90 100.13
13_1_40cm_2_scaffold_143338
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)
2 1594 bp 66.00 2.07 100.13
13_1_40cm_2_scaffold_141130
Species: Scytonema millei (100%)
2 1606 bp 58.41 3.08 100.13
13_1_40cm_2_scaffold_140151
Species: Chroococcidiopsis thermalis (50%)
2 1612 bp 67.31 2.79 100.12
13_1_40cm_2_scaffold_139673
Species: Candidatus Methanoperedens nitroreducens (50%)
2 1615 bp 70.03 3.90 100.12
13_1_40cm_2_scaffold_58942
Species: Nostoc sp. PCC 7107 (50%)
2 2448 bp 55.15 2.33 100.12
13_1_40cm_2_scaffold_167052
Phylum: Chloroflexi (66.67%)
3 2469 bp 54.76 2.31 100.12
13_1_40cm_2_scaffold_125717
Species: RBG_16_KB1_OP1_55_9_curated (100%)
2 1702 bp 69.80 3.08 100.12
13_1_40cm_2_scaffold_366630
Species: RBG_16_RIF_WS3X_71_46_curated (100%)
2 1714 bp 70.54 2.54 100.12
13_1_40cm_2_scaffold_123170
Species: Gloeobacter violaceus (50%)
2 1720 bp 57.62 2.62 100.12
13_1_40cm_2_scaffold_342394
Species: Microcystis aeruginosa (50%)
2 1720 bp 63.60 1.74 100.12
13_1_40cm_2_scaffold_294988
Species: R_OP11_Woesebacteria_38_26 (50%)
2 1723 bp 65.87 2.26 100.12
13_1_40cm_2_scaffold_363581
Species: Nostoc punctiforme (50%)
2 1756 bp 60.19 3.68 100.11
13_1_40cm_2_scaffold_117303
Species: RBG_13_OP3X_46_9_curated (50%)
2 1762 bp 53.92 2.13 100.11
13_1_40cm_2_scaffold_116589
Species: Candidatus Accumulibacter sp. SK-01 (50%)
2 1768 bp 55.26 1.95 100.11
Displaying items 451-500 of 6823 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.