ggKbase home page
Advanced Search
Search Help

13_1_40CM_2_Cyanobacteria_61_4

13_1_40CM_2_Bacteria_61_4
In projects: 13_1_40CM_2  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 3.89 Longest contig: 12.05 Kbp Bin length: 10.91 Mbp GC content: 60.78 %
Contigs count: 6823 Features count: 12402 rRNAs count: 0 tRNAs count: 19

Genome completeness

partial RP 7 / 55 MC: 1 BSCG 3 / 51 ASCG 6 / 38 MC: 1

Description

Just 3 single copy genes.-CB

Displaying items 401-450 of 6823 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_2_scaffold_171369
Species: Nostoc punctiforme (50%)
2 2201 bp 64.52 7.77 100.18
13_1_40cm_2_scaffold_133302
Species: RLO_RIF_CHLX_71_12 (100%)
2 1653 bp 72.84 3.09 100.18
13_1_40cm_2_scaffold_291065
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
2 1123 bp 67.05 1.34 100.18
13_1_40cm_2_scaffold_70512
Species: Thermosynechococcus sp. NK55a (50%)
2 2255 bp 70.64 9.65 100.18
13_1_40cm_2_scaffold_288369
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1129 bp 70.33 3.85 100.18
13_1_40cm_2_scaffold_126370
Species: Oscillatoriales cyanobacterium JSC-12 (50%)
2 1698 bp 66.08 3.53 100.18
13_1_40cm_2_scaffold_283476
Species: Hassallia byssoidea (50%)
2 1138 bp 56.77 1.58 100.18
13_1_40cm_2_scaffold_278976
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 1147 bp 64.95 1.57 100.17
13_1_40cm_2_scaffold_122363
Species: Gloeobacter violaceus (50%)
2 1725 bp 70.55 10.00 100.17
13_1_40cm_2_scaffold_276041
Species: R_Rokubacteria_73_56 (100%)
2 1153 bp 71.73 3.64 100.17
13_1_40cm_2_scaffold_273442
Species: RBG_16_Betaproteobacteria_64_18_curated (50%)
2 1159 bp 68.51 2.07 100.17
13_1_40cm_2_scaffold_119886
Species: RBG_16_Chloroflexi_54_11_curated (50%)
2 1743 bp 66.84 4.22 100.17
13_1_40cm_2_scaffold_119939
Species: RBG_16_Elusimicrobia_66_12_curated (50%)
2 1743 bp 71.94 3.10 100.17
13_1_40cm_2_scaffold_267781
Species: Scytonema millei (50%)
2 1171 bp 73.19 32.28 100.17
13_1_40cm_2_scaffold_267795
Species: Leptolyngbya sp. Heron Island J (50%)
2 1171 bp 62.25 1.28 100.17
13_1_40cm_2_scaffold_263891
Species: Nodularia spumigena (50%)
2 1180 bp 61.78 3.05 100.17
13_1_40cm_2_scaffold_263514
Species: Nostoc sp. PCC 7107 (50%)
2 1180 bp 66.86 3.18 100.17
13_1_40cm_2_scaffold_262393
Species: Chroococcidiopsis thermalis (50%)
2 1183 bp 64.50 4.82 100.17
13_1_40cm_2_scaffold_262171
Species: uncultured bacterium (50%)
2 1183 bp 58.66 1.90 100.17
13_1_40cm_2_scaffold_261187
Species: Anabaena cylindrica (50%)
2 1186 bp 57.93 2.15 100.17
13_1_40cm_2_scaffold_261005
Species: Acaryochloris marina (50%)
2 1186 bp 55.56 1.26 100.17
13_1_40cm_2_scaffold_259767
Species: Microcoleus sp. PCC 7113 (50%)
2 1189 bp 73.76 3.15 100.17
13_1_40cm_2_scaffold_113233
Species: Moorea producens (50%)
2 1794 bp 73.69 6.94 100.17
13_1_40cm_2_scaffold_252347
Species: Pleurocapsa minor (50%)
2 1207 bp 72.08 3.98 100.17
13_1_40cm_2_scaffold_252393
Species: Coleofasciculus chthonoplastes (50%)
2 1207 bp 61.14 2.24 100.17
13_1_40cm_2_scaffold_252211
Species: Candidatus Methanoperedens nitroreducens (50%)
2 1207 bp 70.17 3.23 100.17
13_1_40cm_2_scaffold_250963
Species: Gloeobacter kilaueensis (50%)
2 1210 bp 61.24 1.74 100.16
13_1_40cm_2_scaffold_249771
Species: Chroococcales cyanobacterium CENA595 (50%)
2 1213 bp 69.74 1.48 100.16
13_1_40cm_2_scaffold_108639
Species: R_Acidobacteria_65_29 (100%)
2 1830 bp 65.08 2.13 100.16
13_1_40cm_2_scaffold_244976
Species: Tolypothrix campylonemoides (50%)
2 1225 bp 57.80 1.71 100.16
13_1_40cm_2_scaffold_458253
Species: RBG_16_KB1_OP1_55_9_curated (50%)
2 1225 bp 68.16 3.31 100.16
13_1_40cm_2_scaffold_244903
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)
2 1225 bp 72.41 1.84 100.16
13_1_40cm_2_scaffold_107506
Species: Tolypothrix sp. PCC 7601 (50%)
2 1839 bp 56.28 1.63 100.16
13_1_40cm_2_scaffold_242676
Species: Mastigocladus laminosus (50%)
2 1231 bp 76.28 8.65 100.16
13_1_40cm_2_scaffold_453858
Species: RBG_16_Chloroflexi_56_8_curated (50%)
2 1234 bp 64.67 1.46 100.16
13_1_40cm_2_scaffold_57354
Species: RBG_16_Euryarchaeota_68_13_curated (50%)
2 2480 bp 67.78 51.17 100.16
13_1_40cm_2_scaffold_238147
Species: Rivularia sp. PCC 7116 (50%)
2 1243 bp 60.10 1.93 100.16
13_1_40cm_2_scaffold_237104
Species: CG_Omnitr_06 (50%)
2 1246 bp 59.95 2.41 100.16
13_1_40cm_2_scaffold_237141
Species: Halothece sp. PCC 7418 (50%)
2 1246 bp 68.86 1.32 100.16
13_1_40cm_2_scaffold_102716
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)
2 1881 bp 66.56 3.19 100.16
13_1_40cm_2_scaffold_233821
Species: Crinalium epipsammum (50%)
2 1255 bp 60.32 12.43 100.16
13_1_40cm_2_scaffold_233611
Species: Acaryochloris marina (50%)
2 1255 bp 70.28 3.11 100.16
13_1_40cm_2_scaffold_232498
Species: RBG_16_Caldithrix_48_16_curated (50%)
2 1258 bp 55.64 1.79 100.16
13_1_40cm_2_scaffold_229519
Species: uncultured bacterium (50%)
2 1267 bp 68.51 2.60 100.16
13_1_40cm_2_scaffold_100412
Species: Hassallia byssoidea (50%)
2 1902 bp 62.30 2.37 100.16
13_1_40cm_2_scaffold_225961
Species: Cyanothece sp. PCC 7425 (50%)
2 1276 bp 60.34 1.41 100.16
13_1_40cm_2_scaffold_98484
Species: Stanieria cyanosphaera (50%)
2 1920 bp 64.06 2.27 100.16
13_1_40cm_2_scaffold_224121
Species: Synechococcus sp. PCC 7502 (50%)
2 1282 bp 56.47 1.52 100.16
13_1_40cm_2_scaffold_98156
Species: Cylindrospermum stagnale (100%)
2 1923 bp 56.94 1.95 100.16
13_1_40cm_2_scaffold_121300
Species: RBG_19FT_COMBO_Chloroflexi_50_10_curated (50%)
2 2567 bp 67.00 3.86 100.16
Displaying items 401-450 of 6823 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.