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13_1_40CM_2_Cyanobacteria_61_4

13_1_40CM_2_Bacteria_61_4
In projects: 13_1_40CM_2  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 3.89 Longest contig: 12.05 Kbp Bin length: 10.91 Mbp GC content: 60.78 %
Contigs count: 6823 Features count: 12402 rRNAs count: 0 tRNAs count: 19

Genome completeness

partial RP 7 / 55 MC: 1 BSCG 3 / 51 ASCG 6 / 38 MC: 1

Description

Just 3 single copy genes.-CB

Displaying items 351-400 of 6823 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_2_scaffold_449030
Species: RBG_16_Chloroflexi_63_12_curated (50%)
2 1275 bp 63.84 12.00 100.24
13_1_40cm_2_scaffold_225365
Species: R_Acidobacteria_67_21 (100%)
2 1278 bp 68.00 1.88 100.24
13_1_40cm_2_scaffold_224264
Species: RLO_RIF_CHLX_71_12 (100%)
2 1281 bp 71.12 3.16 100.23
13_1_40cm_2_scaffold_223356
Species: Geitlerinema sp. PCC 7407 (50%)
2 1284 bp 68.46 2.80 100.23
13_1_40cm_2_scaffold_221131
Species: Chroococcidiopsis thermalis (50%)
2 1290 bp 70.31 7.56 100.23
13_1_40cm_2_scaffold_121709
Species: Gloeobacter violaceus (50%)
2 1730 bp 65.49 1.99 100.23
13_1_40cm_2_scaffold_375549
Species: RBG_16_RIF_CHLX_72_14_curated (100%)
2 1733 bp 71.09 2.42 100.23
13_1_40cm_2_scaffold_217203
Species: Pseudanabaena sp. PCC 7367 (50%)
2 1302 bp 56.84 1.96 100.23
13_1_40cm_2_scaffold_215161
Species: Streptomyces natalensis (50%)
2 1308 bp 68.81 1.61 100.23
13_1_40cm_2_scaffold_35221
Phylum: Cyanobacteria (100%)
3 3095 bp 66.72 4.02 100.23
13_1_40cm_2_scaffold_208271
Species: RBG_19FT_COMBO_Nitrospirae_42_15_curated (50%)
2 1329 bp 64.33 1.92 100.23
13_1_40cm_2_scaffold_206376
Species: Fischerella sp. JSC-11 (50%)
2 1335 bp 56.63 4.16 100.23
13_1_40cm_2_scaffold_203522
Species: R_Nitrospirae_62_14 (50%)
2 1344 bp 56.40 3.35 100.22
13_1_40cm_2_scaffold_202603
Species: Pyrinomonas methylaliphatogenes (50%)
2 1347 bp 61.47 2.56 100.22
13_1_40cm_2_scaffold_196494
Species: Gloeocapsa sp. PCC 7428 (50%)
2 1368 bp 68.35 3.40 100.22
13_1_40cm_2_scaffold_196517
Species: RLO_RIF_CHLX_71_12 (100%)
2 1368 bp 69.52 5.81 100.22
13_1_40cm_2_scaffold_44118
Species: Raphidiopsis brookii (50%)
2 5038 bp 61.99 4.11 100.22
13_1_40cm_2_scaffold_192109
Species: R_Acidobacteria_67_21 (100%)
2 1383 bp 67.75 2.06 100.22
13_1_40cm_2_scaffold_106227
Species: GWB1_OD1_41_7 (50%)
2 1850 bp 63.24 2.59 100.22
13_1_40cm_2_scaffold_190477
Species: Gloeobacter violaceus (50%)
2 1389 bp 69.91 2.81 100.22
13_1_40cm_2_scaffold_185490
Species: Hassallia byssoidea (50%)
2 1407 bp 56.43 1.28 100.21
13_1_40cm_2_scaffold_62993
Species: RIFOXYA2_FULL_OD1_Falkowbacteria_47_9_curated (50%)
2 4236 bp 55.10 5.95 100.21
13_1_40cm_2_scaffold_183818
Species: Crocosphaera watsonii (50%)
2 1413 bp 64.47 1.70 100.21
13_1_40cm_2_scaffold_180408
Species: RBG_16_Actinobacteria_64_13_curated (50%)
2 1425 bp 64.77 4.63 100.21
13_1_40cm_2_scaffold_177262
Species: Pleurocapsa minor (50%)
2 1437 bp 73.56 2.51 100.21
13_1_40cm_2_scaffold_95268
Species: Crinalium epipsammum (50%)
2 1952 bp 67.88 3.69 100.21
13_1_40cm_2_scaffold_169261
Species: Synechococcus sp. WH 5701 (50%)
2 1470 bp 57.82 2.55 100.20
13_1_40cm_2_scaffold_162934
Species: Gloeobacter violaceus (100%)
2 1497 bp 66.93 10.72 100.20
13_1_40cm_2_scaffold_87480
Species: Synechococcus elongatus (50%)
2 2033 bp 66.16 3.69 100.20
13_1_40cm_2_scaffold_153862
Species: Nostoc sp. PCC 7107 (50%)
2 1539 bp 61.53 2.53 100.20
13_1_40cm_2_scaffold_153923
Species: Gloeobacter kilaueensis (50%)
2 1539 bp 64.65 3.12 100.20
13_1_40cm_2_scaffold_340350
Species: Moorea producens (50%)
2 1030 bp 67.67 1.31 100.19
13_1_40cm_2_scaffold_151505
Species: Stanieria cyanosphaera (50%)
2 1551 bp 63.70 7.25 100.19
13_1_40cm_2_scaffold_337698
Species: Dyella japonica (50%)
2 1036 bp 67.86 5.94 100.19
13_1_40cm_2_scaffold_150865
Species: RLO_Gemmatimonadetes_68_9 (100%)
2 1554 bp 72.33 34.75 100.19
13_1_40cm_2_scaffold_149665
Species: Georgenia sp. SUBG003 (50%)
2 1560 bp 70.26 4.62 100.19
13_1_40cm_2_scaffold_148574
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
2 1566 bp 67.82 2.68 100.19
13_1_40cm_2_scaffold_419847
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1566 bp 70.11 14.75 100.19
13_1_40cm_2_scaffold_331648
Species: Nostoc punctiforme (50%)
2 1048 bp 56.39 2.00 100.19
13_1_40cm_2_scaffold_82236
Species: Nodularia spumigena (50%)
2 2096 bp 68.03 10.02 100.19
13_1_40cm_2_scaffold_331993
Species: Candidatus Solibacter usitatus (50%)
2 1048 bp 56.39 2.00 100.19
13_1_40cm_2_scaffold_327094
Species: [Oscillatoria] sp. PCC 6506 (50%)
2 1057 bp 56.58 2.13 100.19
13_1_40cm_2_scaffold_324012
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1063 bp 74.32 4.23 100.19
13_1_40cm_2_scaffold_78654
Species: Nostoc punctiforme (50%)
2 2141 bp 69.69 2.80 100.19
13_1_40cm_2_scaffold_269503
Species: Gloeocapsa sp. PCC 7428 (50%)
2 1608 bp 55.85 2.24 100.19
13_1_40cm_2_scaffold_609197
Species: Lyngbya majuscula (50%)
2 1075 bp 73.67 2.51 100.19
13_1_40cm_2_scaffold_138800
Species: R_Rokubacteria_73_56 (100%)
3 1620 bp 69.94 6.30 100.18
13_1_40cm_2_scaffold_76770
Species: Gloeobacter kilaueensis (100%)
2 2165 bp 56.49 4.36 100.18
13_1_40cm_2_scaffold_19945
Phylum: Cyanobacteria (50%)
4 6040 bp 73.71 3.40 100.18
13_1_40cm_2_scaffold_304233
Species: Oscillatoriales cyanobacterium JSC-12 (50%)
2 1099 bp 67.15 1.91 100.18
Displaying items 351-400 of 6823 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.