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13_1_40CM_2_Cyanobacteria_61_4

13_1_40CM_2_Bacteria_61_4
In projects: 13_1_40CM_2  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 3.89 Longest contig: 12.05 Kbp Bin length: 10.91 Mbp GC content: 60.78 %
Contigs count: 6823 Features count: 12402 rRNAs count: 0 tRNAs count: 19

Genome completeness

partial RP 7 / 55 MC: 1 BSCG 3 / 51 ASCG 6 / 38 MC: 1

Description

Just 3 single copy genes.-CB

Displaying items 301-350 of 6823 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_2_scaffold_351442
Species: Scytonema tolypothrichoides (50%)
2 1005 bp 67.06 1.79 100.30
13_1_40cm_2_scaffold_203950
Species: Tolypothrix sp. PCC 7601 (50%)
2 1343 bp 54.21 2.68 100.30
13_1_40cm_2_scaffold_350269
Species: Cyanothece sp. PCC 7822 (50%)
2 1008 bp 54.07 1.19 100.30
13_1_40cm_2_scaffold_346462
Species: RLO_Rokubacteria_71_22 (50%)
2 1017 bp 65.49 7.96 100.30
13_1_40cm_2_scaffold_199333
Species: Nostoc sp. PCC 7107 (50%)
2 1358 bp 72.53 1.99 100.30
13_1_40cm_2_scaffold_135023
Species: RBG_16_Chloroflexi_68_14_curated (50%)
2 2381 bp 63.42 17.01 100.29
13_1_40cm_2_scaffold_59240
Phylum: Acidobacteria (50%)
6 4445 bp 71.86 5.20 100.29
13_1_40cm_2_scaffold_342542
Species: Syntrophaceticus schinkii (50%)
2 1026 bp 69.49 2.05 100.29
13_1_40cm_2_scaffold_548646
Species: Candidatus Magnetobacterium bavaricum (50%)
2 1026 bp 59.26 3.95 100.29
13_1_40cm_2_scaffold_103807
Domain: Bacteria (75%)
4 3114 bp 58.29 8.43 100.29
13_1_40cm_2_scaffold_190751
Species: Gloeobacter kilaueensis (50%)
2 1388 bp 72.48 3.89 100.29
13_1_40cm_2_scaffold_330730
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)
2 1050 bp 71.52 1.43 100.29
13_1_40cm_2_scaffold_331016
Species: Nostoc sp. PCC 7524 (50%)
2 1050 bp 54.00 1.29 100.29
13_1_40cm_2_scaffold_327521
Species: R_Betaproteobacteria_63_19 (50%)
2 1056 bp 66.95 6.39 100.28
13_1_40cm_2_scaffold_376431
Species: Moorea producens (50%)
2 1409 bp 71.19 2.54 100.28
13_1_40cm_2_scaffold_326038
Species: Gloeobacter violaceus (50%)
2 1059 bp 56.56 1.70 100.28
13_1_40cm_2_scaffold_321066
Species: Limnoraphis robusta (50%)
2 1068 bp 65.36 2.11 100.28
13_1_40cm_2_scaffold_384962
Species: Gloeobacter kilaueensis (100%)
2 1424 bp 58.15 2.74 100.28
13_1_40cm_2_scaffold_78581
Species: RBG_13_Actinobacteria_63_9_curated (50%)
2 2142 bp 62.56 6.44 100.28
13_1_40cm_2_scaffold_307885
Species: Gloeobacter kilaueensis (50%)
2 1092 bp 64.10 2.34 100.28
13_1_40cm_2_scaffold_74503
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated (50%)
2 2196 bp 61.57 20.97 100.27
13_1_40cm_2_scaffold_304960
Species: Tolypothrix sp. PCC 7601 (50%)
2 1098 bp 56.10 2.19 100.27
13_1_40cm_2_scaffold_304741
Species: Leptolyngbya sp. Heron Island J (50%)
2 1098 bp 65.57 5.60 100.27
13_1_40cm_2_scaffold_23566
Species: Nostoc sp. PCC 7524 (50%)
4 3677 bp 55.53 5.75 100.27
13_1_40cm_2_scaffold_298194
Species: Cylindrospermum stagnale (50%)
2 1110 bp 52.52 1.49 100.27
13_1_40cm_2_scaffold_296807
Species: Cyanothece sp. PCC 7425 (50%)
2 1113 bp 62.71 1.89 100.27
13_1_40cm_2_scaffold_296740
Species: Gloeobacter violaceus (50%)
2 1113 bp 69.36 2.83 100.27
13_1_40cm_2_scaffold_294884
Species: RIFOXYD1_FULL_Bdellovibrionales_53_11_curated (100%)
2 1116 bp 47.76 2.15 100.27
13_1_40cm_2_scaffold_293703
Species: Spirulina subsalsa (50%)
2 1119 bp 67.38 3.08 100.27
13_1_40cm_2_scaffold_293505
Species: Gloeocapsa sp. PCC 7428 (50%)
2 1119 bp 69.08 3.49 100.27
13_1_40cm_2_scaffold_293390
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated (50%)
2 1119 bp 53.26 1.61 100.27
13_1_40cm_2_scaffold_290201
Species: BJP_IG2157_Anaerolineales_55_23 (50%)
2 1125 bp 61.69 1.33 100.27
13_1_40cm_2_scaffold_572702
Species: Crocosphaera watsonii (50%)
2 1128 bp 64.27 2.66 100.27
13_1_40cm_2_scaffold_287041
Species: Nostoc punctiforme (50%)
2 1131 bp 56.50 2.79 100.27
13_1_40cm_2_scaffold_69664
Species: Candidatus Solibacter usitatus (100%)
2 2268 bp 58.55 3.37 100.27
13_1_40cm_2_scaffold_282456
Species: Anabaena sp. 90 (50%)
2 1140 bp 56.23 1.97 100.26
13_1_40cm_2_scaffold_280845
Species: Mycobacterium abscessus (50%)
2 1143 bp 71.04 3.15 100.26
13_1_40cm_2_scaffold_278307
Species: Microcoleus sp. PCC 7113 (50%)
2 1149 bp 70.41 2.61 100.26
13_1_40cm_2_scaffold_278239
Species: Thermosynechococcus sp. NK55a (50%)
2 1149 bp 68.76 1.83 100.26
13_1_40cm_2_scaffold_285148
Species: Gloeobacter violaceus (50%)
2 1538 bp 69.70 29.13 100.26
13_1_40cm_2_scaffold_266897
Species: Candidatus Thiomargarita nelsonii (50%)
2 1173 bp 65.64 2.56 100.26
13_1_40cm_2_scaffold_146853
Species: Trichodesmium erythraeum (50%)
2 1574 bp 59.02 8.67 100.25
13_1_40cm_2_scaffold_260066
Species: Crinalium epipsammum (100%)
2 1188 bp 66.08 2.40 100.25
13_1_40cm_2_scaffold_258807
Species: Pyrinomonas methylaliphatogenes (50%)
2 1191 bp 73.05 5.42 100.25
13_1_40cm_2_scaffold_15663
Domain: Bacteria (100%)
3 4369 bp 63.95 2.99 100.25
13_1_40cm_2_scaffold_255234
Species: Gloeocapsa sp. PCC 7428 (50%)
2 1200 bp 65.00 4.13 100.25
13_1_40cm_2_scaffold_269033
Species: R_Betaproteobacteria_63_19 (50%)
2 1604 bp 65.09 5.70 100.25
13_1_40cm_2_scaffold_245402
Species: Gloeobacter kilaueensis (50%)
2 1224 bp 69.69 3.19 100.25
13_1_40cm_2_scaffold_244075
Species: Microcoleus sp. PCC 7113 (50%)
2 1227 bp 63.41 1.22 100.24
13_1_40cm_2_scaffold_40595
Species: Pyrinomonas methylaliphatogenes (100%)
3 2900 bp 57.83 5.22 100.24
Displaying items 301-350 of 6823 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.