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13_1_40CM_2_Cyanobacteria_61_4

13_1_40CM_2_Bacteria_61_4
In projects: 13_1_40CM_2  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 3.89 Longest contig: 12.05 Kbp Bin length: 10.91 Mbp GC content: 60.78 %
Contigs count: 6823 Features count: 12402 rRNAs count: 0 tRNAs count: 19

Genome completeness

partial RP 7 / 55 MC: 1 BSCG 3 / 51 ASCG 6 / 38 MC: 1

Description

Just 3 single copy genes.-CB

Displaying items 251-300 of 6823 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_2_scaffold_231864
Species: Leptolyngbya sp. PCC 7376 (50%)
2 1260 bp 52.06 1.19 100.48
13_1_40cm_2_scaffold_220168
Species: Fischerella sp. JSC-11 (50%)
2 1293 bp 59.86 4.52 100.46
13_1_40cm_2_scaffold_215047
Species: Synechococcus sp. WH 5701 (50%)
2 1308 bp 69.95 8.26 100.46
13_1_40cm_2_scaffold_198306
Species: Synechococcus sp. PCC 7002 (50%)
2 1362 bp 51.69 1.54 100.44
13_1_40cm_2_scaffold_413990
Phylum: Cyanobacteria (66.67%)
3 1374 bp 41.48 2.07 100.44
13_1_40cm_2_scaffold_269195
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1168 bp 70.29 2.70 100.43
13_1_40cm_2_scaffold_259824
Order: Nostocales (66.67%)
3 1189 bp 59.13 1.01 100.42
13_1_40cm_2_scaffold_250821
Species: Leptolyngbya sp. Heron Island J (50%)
2 1210 bp 55.70 2.85 100.41
13_1_40cm_2_scaffold_164922
Species: R_WOR_2_68_15 (50%)
2 1488 bp 59.34 2.02 100.40
13_1_40cm_2_scaffold_237022
Species: CG_Delta_07 (50%)
2 1246 bp 56.74 2.17 100.40
13_1_40cm_2_scaffold_235818
Phylum: Cyanobacteria (66.67%)
3 1249 bp 70.46 1.32 100.40
13_1_40cm_2_scaffold_349531
Species: R_Nitrospirae_62_14 (50%)
2 1010 bp 65.25 2.67 100.40
13_1_40cm_2_scaffold_214127
Order: Nostocales (50%)
4 2531 bp 68.04 4.33 100.40
13_1_40cm_2_scaffold_344364
Species: R_Proteobacteria_53_8 (50%)
2 1022 bp 43.93 1.76 100.39
13_1_40cm_2_scaffold_338502
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)
2 1034 bp 61.80 6.24 100.39
13_1_40cm_2_scaffold_336055
Species: Leptolyngbya sp. Heron Island J (50%)
2 1040 bp 68.37 3.46 100.38
13_1_40cm_2_scaffold_216025
Phylum: Cyanobacteria (66.67%)
3 1306 bp 66.16 4.13 100.38
13_1_40cm_2_scaffold_329594
Species: Gloeobacter kilaueensis (50%)
2 1052 bp 67.49 1.43 100.38
13_1_40cm_2_scaffold_211949
Species: Gloeocapsa sp. PCC 7428 (50%)
2 1318 bp 60.77 3.30 100.38
13_1_40cm_2_scaffold_323377
Species: Geitlerinema sp. PCC 7407 (50%)
2 1064 bp 65.32 2.40 100.38
13_1_40cm_2_scaffold_321954
Species: Cylindrospermum stagnale (50%)
2 1067 bp 56.04 1.55 100.37
13_1_40cm_2_scaffold_206063
Domain: Bacteria (100%)
3 1336 bp 73.43 4.83 100.37
13_1_40cm_2_scaffold_168751
Phylum: Cyanobacteria (50%)
4 4053 bp 56.43 5.85 100.37
13_1_40cm_2_scaffold_199730
Species: Crinalium epipsammum (66.67%)
3 1357 bp 67.80 4.09 100.37
13_1_40cm_2_scaffold_306711
Species: Gloeobacter kilaueensis (50%)
2 1094 bp 68.37 2.61 100.37
13_1_40cm_2_scaffold_161632
Species: Oscillatoria nigro-viridis (50%)
2 1922 bp 57.65 2.34 100.36
13_1_40cm_2_scaffold_303830
Species: Gloeocapsa sp. PCC 73106 (50%)
2 1100 bp 63.82 2.73 100.36
13_1_40cm_2_scaffold_303515
Species: GWA2_Ignavibacteria_54_16_curated (50%)
2 1100 bp 69.36 4.23 100.36
13_1_40cm_2_scaffold_194415
Species: Candidatus Methanoperedens nitroreducens (50%)
2 1375 bp 68.29 2.95 100.36
13_1_40cm_2_scaffold_297260
Species: Chroococcidiopsis thermalis (50%)
2 1112 bp 67.72 2.83 100.36
13_1_40cm_2_scaffold_68220
Domain: Bacteria (100%)
4 3351 bp 71.77 3.16 100.36
13_1_40cm_2_scaffold_372174
Species: Microcystis aeruginosa (50%)
2 1680 bp 56.73 2.32 100.36
13_1_40cm_2_scaffold_292553
Species: R_Gemmatimonadetes_71_11 (50%)
2 1121 bp 72.61 3.21 100.36
13_1_40cm_2_scaffold_35149
Order: Nostocales (50%)
4 3097 bp 67.81 2.28 100.35
13_1_40cm_2_scaffold_287762
Species: BJP_IG2069_Syntrophobacterales_46_30 (50%)
2 1130 bp 68.85 1.86 100.35
13_1_40cm_2_scaffold_43032
Phylum: Gemmatimonadetes (50%)
4 2828 bp 68.07 6.10 100.35
13_1_40cm_2_scaffold_524313
Species: Pyrinomonas methylaliphatogenes (100%)
3 1423 bp 72.31 12.97 100.35
13_1_40cm_2_scaffold_275500
Phylum: Cyanobacteria (66.67%)
3 1154 bp 72.27 11.70 100.35
13_1_40cm_2_scaffold_275526
Species: Scytonema tolypothrichoides (50%)
2 1154 bp 56.15 1.56 100.35
13_1_40cm_2_scaffold_88015
Species: Xenococcus sp. PCC 7305 (100%)
2 2027 bp 63.15 2.37 100.35
13_1_40cm_2_scaffold_261731
Species: R_Acidobacteria_67_28 (50%)
2 1184 bp 60.30 2.03 100.34
13_1_40cm_2_scaffold_254132
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1202 bp 63.23 1.62 100.33
13_1_40cm_2_scaffold_240179
Species: Oscillatoria acuminata (50%)
2 1238 bp 70.19 1.45 100.32
13_1_40cm_2_scaffold_229157
Species: uncultured bacterium (50%)
2 1268 bp 45.35 1.54 100.32
13_1_40cm_2_scaffold_229232
Species: R_NC10_66_22 (50%)
2 1268 bp 53.15 2.25 100.32
13_1_40cm_2_scaffold_67957
Phylum: Cyanobacteria (50%)
4 2294 bp 60.29 2.75 100.31
13_1_40cm_2_scaffold_92460
Order: Chroococcales (66.67%)
3 1980 bp 53.48 2.42 100.30
13_1_40cm_2_scaffold_209756
Species: Pleurocapsa minor (50%)
2 1325 bp 70.64 1.92 100.30
13_1_40cm_2_scaffold_29786
Phylum: Proteobacteria (50%)
4 3326 bp 69.72 2.48 100.30
13_1_40cm_2_scaffold_90189
Species: Gloeobacter violaceus (50%)
2 2004 bp 59.48 2.40 100.30
Displaying items 251-300 of 6823 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.