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13_1_40CM_2_Cyanobacteria_61_4

13_1_40CM_2_Bacteria_61_4
In projects: 13_1_40CM_2  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 3.89 Longest contig: 12.05 Kbp Bin length: 10.91 Mbp GC content: 60.78 %
Contigs count: 6823 Features count: 12402 rRNAs count: 0 tRNAs count: 19

Genome completeness

partial RP 7 / 55 MC: 1 BSCG 3 / 51 ASCG 6 / 38 MC: 1

Description

Just 3 single copy genes.-CB

Displaying items 201-250 of 6823 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_2_scaffold_157148
Species: Gloeobacter violaceus (50%)
2 1523 bp 62.97 1.28 100.85
13_1_40cm_2_scaffold_116646
Species: Gloeobacter kilaueensis (50%)
2 1767 bp 68.53 2.63 100.85
13_1_40cm_2_scaffold_115540
Species: R_Acidobacteria_67_28 (50%)
2 1776 bp 58.11 2.45 100.85
13_1_40cm_2_scaffold_255499
Species: Gloeocapsa sp. PCC 7428 (100%)
2 1199 bp 71.73 15.64 100.83
13_1_40cm_2_scaffold_248160
Species: Nitrosomonas communis (50%)
2 1217 bp 74.45 12.33 100.82
13_1_40cm_2_scaffold_287335
Species: RLO_Entotheonella_69_37 (100%)
2 1711 bp 69.96 2.02 100.82
13_1_40cm_2_scaffold_103061
Species: Geitlerinema sp. PCC 7407 (50%)
2 1878 bp 57.61 2.08 100.80
13_1_40cm_2_scaffold_314988
Species: Microcoleus sp. PCC 7113 (50%)
2 1518 bp 71.21 2.96 100.79
13_1_40cm_2_scaffold_282375
Species: R_OD1_Kaiserbacteria_51_13 (50%)
2 1140 bp 52.98 2.11 100.79
13_1_40cm_2_scaffold_77285
Phylum: Cyanobacteria (66.67%)
3 2158 bp 66.54 2.22 100.79
13_1_40cm_2_scaffold_299130
Species: Chroococcidiopsis thermalis (50%)
2 1911 bp 71.11 6.50 100.79
13_1_40cm_2_scaffold_36594
Phylum: Cyanobacteria (66.67%)
3 6180 bp 66.23 3.06 100.78
13_1_40cm_2_scaffold_182677
Species: Moorea producens (50%)
2 1417 bp 67.96 1.91 100.78
13_1_40cm_2_scaffold_52065
Phylum: Cyanobacteria (50%)
4 2593 bp 70.88 6.25 100.77
13_1_40cm_2_scaffold_57998
Phylum: Cyanobacteria (50%)
4 2468 bp 69.61 4.38 100.77
13_1_40cm_2_scaffold_265563
Species: Anabaena cylindrica (50%)
2 1176 bp 59.35 3.83 100.76
13_1_40cm_2_scaffold_105405
Species: RLO_Gemmatimonadetes_68_9 (100%)
2 1858 bp 72.34 7.51 100.75
13_1_40cm_2_scaffold_320557
Species: Oscillatoriales cyanobacterium JSC-12 (50%)
2 1069 bp 60.15 2.39 100.75
13_1_40cm_2_scaffold_205908
Species: RBG_16_Planctomycetes_64_12_curated (50%)
2 1337 bp 60.51 2.13 100.75
13_1_40cm_2_scaffold_73350
Domain: Bacteria (66.67%)
3 2213 bp 71.13 2.44 100.72
13_1_40cm_2_scaffold_296157
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)
2 1114 bp 68.58 26.66 100.72
13_1_40cm_2_scaffold_78525
Species: RLO_Entotheonella_69_37 (66.67%)
3 2142 bp 69.28 2.73 100.70
13_1_40cm_2_scaffold_240163
Order: Nostocales (50%)
4 2959 bp 64.99 6.68 100.68
13_1_40cm_2_scaffold_331553
Species: Mycobacterium chelonae (50%)
2 1049 bp 68.64 1.43 100.67
13_1_40cm_2_scaffold_326760
Species: Cystobacter violaceus (50%)
2 1058 bp 54.63 1.98 100.66
13_1_40cm_2_scaffold_110554
Species: Tolypothrix campylonemoides (50%)
2 1815 bp 55.48 1.82 100.66
13_1_40cm_2_scaffold_4395
Species: RBG_16_Betaproteobacteria_56_24_curated (50%)
2 7833 bp 60.40 3.72 100.65
13_1_40cm_2_scaffold_104384
Species: Acaryochloris marina (66.67%)
3 1866 bp 69.40 2.01 100.64
13_1_40cm_2_scaffold_305463
Species: Paenibacillus sp. IHB B 3415 (50%)
2 1097 bp 62.63 2.73 100.64
13_1_40cm_2_scaffold_298490
Species: Gloeobacter violaceus (50%)
2 1109 bp 62.13 3.92 100.63
13_1_40cm_2_scaffold_62395
Species: Mastigocladus laminosus (50%)
2 2385 bp 60.00 3.77 100.63
13_1_40cm_2_scaffold_292346
Species: RBG_16_Zixibacteria_43_9_curated (50%)
2 1121 bp 54.77 9.50 100.62
13_1_40cm_2_scaffold_223929
Species: RBG_16_Deltaproteobacteria_50_11_curated (50%)
2 1282 bp 70.51 1.99 100.62
13_1_40cm_2_scaffold_286137
Species: Thermosynechococcus elongatus (50%)
2 1133 bp 71.32 3.05 100.62
13_1_40cm_2_scaffold_278367
Species: CG_Arma_01 (50%)
2 1148 bp 50.61 1.31 100.61
13_1_40cm_2_scaffold_135402
Species: R_Acidobacteria_65_29 (50%)
2 1640 bp 70.55 4.02 100.61
13_1_40cm_2_scaffold_21891
Species: Candidatus Methanoperedens nitroreducens (50%)
4 3802 bp 72.04 5.48 100.61
13_1_40cm_2_scaffold_132543
Species: Gloeocapsa sp. PCC 7428 (100%)
2 1658 bp 70.99 1.90 100.60
13_1_40cm_2_scaffold_259334
Species: RBG_16_Chloroflexi_57_11_curated (50%)
2 1664 bp 56.49 2.70 100.60
13_1_40cm_2_scaffold_75390
Species: R_OD1_Nomurabacteria_36_29 (50%)
2 2183 bp 52.91 2.61 100.60
13_1_40cm_2_scaffold_260724
Species: R_OD1_48_18 (50%)
2 1187 bp 56.36 1.90 100.59
13_1_40cm_2_scaffold_60519
Phylum: Cyanobacteria (66.67%)
3 2419 bp 68.04 2.98 100.58
13_1_40cm_2_scaffold_357009
Species: R_Acidobacteria_61_28 (50%)
2 1411 bp 56.70 3.30 100.57
13_1_40cm_2_scaffold_139803
Species: Chroococcidiopsis thermalis (66.67%)
3 1614 bp 71.87 2.60 100.56
13_1_40cm_2_scaffold_88689
Order: Chroococcales (66.67%)
3 2020 bp 69.55 2.00 100.55
13_1_40cm_2_scaffold_88122
Species: Gloeocapsa sp. PCC 7428 (50%)
2 2026 bp 61.20 2.59 100.54
13_1_40cm_2_scaffold_51298
Species: Chroococcidiopsis thermalis (50%)
2 2611 bp 62.62 3.33 100.54
13_1_40cm_2_scaffold_187441
Species: Synechococcus sp. PCC 6312 (50%)
2 1400 bp 65.14 1.93 100.50
13_1_40cm_2_scaffold_12934
Phylum: Cyanobacteria (60%)
5 4726 bp 55.59 3.11 100.49
13_1_40cm_2_scaffold_22589
Domain: Bacteria (75%)
4 3747 bp 63.54 4.00 100.48
Displaying items 201-250 of 6823 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.