ggKbase home page

13_1_40cm_2_scaffold_1306

Search features with annotation key words

Displaying items 1-30 of 40 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1306_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..143)
DNA (141bp) protein (47aa)
Fimbrial protein pilin Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fimbrial protein pilin id=14625677 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_1306_2
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

739..1425
DNA (687bp) protein (229aa)
peptidase S9 prolyl oligopeptidase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
peptidase S9 prolyl oligopeptidase id=12550217 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
peptidase S9 prolyl oligopeptidase
13_1_40cm_2_scaffold_1306_3
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1451..3355
DNA (1905bp) protein (635aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000367495D rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO35354.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp.
hypothetical protein
13_1_40cm_2_scaffold_1306_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3391..3861)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3Q1I2_STANL
conserved hypothetical protein, DUF2587 superfamily Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_40cm_2_scaffold_1306_5
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3885..4424)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI0003733CEE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW95299.1}; TaxID=1003195 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC
13_1_40cm_2_scaffold_1306_6
Natrinema altunense, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

4700..5173
DNA (474bp) protein (158aa)
Uncharacterized protein {ECO:0000313|EMBL:ELY89712.1}; TaxID=1227494 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema altunense JCM 12890.;"
13_1_40cm_2_scaffold_1306_7
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(5170..6345)
DNA (1176bp) protein (392aa)
sulfite oxidase (EC:1.8.3.1) id=14429311 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
sulfite oxidase (EC:1.8.3.1) Tax=CSP1_5_NC10
sulfite oxidase (EC:1.8.3.1)
13_1_40cm_2_scaffold_1306_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

6442..7047
DNA (606bp) protein (202aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=4221598 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_1306_9
unknown

Not on your lists

7065..7418
DNA (354bp) protein (118aa)

This feature has no annotations

13_1_40cm_2_scaffold_1306_10
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

7697..7969
DNA (273bp) protein (91aa)
Methylglyoxal synthase {ECO:0000256|SAAS:SAAS00089917}; EC=4.2.3.3 {ECO:0000256|SAAS:SAAS00089921};; TaxID=118168 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Coleofascicu
Methylglyoxal synthase, putative n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VTK3_9CYAN
methylglyoxal synthase
13_1_40cm_2_scaffold_1306_11
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

8011..8268
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4ELN4_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF85596.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source
13_1_40cm_2_scaffold_1306_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8687..9154
DNA (468bp) protein (156aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14627300 bin=bin7_NC10_sister species=Acetobacter tropicalis genus=Acetobacter taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_1306_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

9270..9641
DNA (372bp) protein (124aa)
Proline-rich region n=1 Tax=Azoarcus sp. KH32C RepID=H0Q0N5_9RHOO
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
proline-rich region
13_1_40cm_2_scaffold_1306_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(10234..10509)
DNA (276bp) protein (92aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_40cm_2_scaffold_1306_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10571..11284)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003781CD2
hypothetical protein; K07020 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_2_scaffold_1306_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(11411..12058)
DNA (648bp) protein (216aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
signAl transduction histidine kinase containing a receiver domain id=14627170 bin=bin7_NC10_sister species=Thermus scotoductus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_1306_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12357..14180
DNA (1824bp) protein (608aa)
tapB; type IV pilus assembly protein tapB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type IV-A pilus assembly ATPase PilB id=4686859 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
pilB; type IV pilus biogenesis ATPase PilB
13_1_40cm_2_scaffold_1306_18
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(14205..15575)
DNA (1371bp) protein (457aa)
Metallo-beta-lactamase family protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L4X0_THERP
beta-lactamase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
metallo-beta-lactamase family protein
13_1_40cm_2_scaffold_1306_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15632..15946
DNA (315bp) protein (105aa)
dioxygenase, ferredoxin subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Dioxygenase, ferredoxin subunit id=4745862 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dioxygenase, ferredoxin subunit
13_1_40cm_2_scaffold_1306_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(16312..16512)
DNA (201bp) protein (67aa)
Uncharacterized protein conserved in bacteria id=3301632 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein; K09942 hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_2_scaffold_1306_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16894..17517
DNA (624bp) protein (208aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4745859 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_1306_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(17560..17769)
DNA (210bp) protein (70aa)
Thiol-specific antioxidant protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Thiol-specific antioxidant protein id=4327972 bin=GWA2_Methylomirabilis_73_35 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_1306_23
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(17914..18051)
DNA (138bp) protein (46aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein id=4327970 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_1306_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18056..20125)
DNA (2070bp) protein (690aa)
putative phenylacetic acid degradation protein; K02609 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
phenylacetate--CoA ligase (EC:6.2.1.30)
Putative phenylacetic acid degradation protein id=4527241 bin=GWF2_Methylomirabilis_70_14 species=Bacteriovorax marinus genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_1306_25
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20122..20490)
DNA (369bp) protein (123aa)
Uncharacterized protein {ECO:0000313|EMBL:KFE64394.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyal
13_1_40cm_2_scaffold_1306_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20653..21813)
DNA (1161bp) protein (387aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=4745855 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
group 1 glycosyl transferase
13_1_40cm_2_scaffold_1306_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(21826..22332)
DNA (507bp) protein (169aa)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB id=4745854 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_2_scaffold_1306_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22317..23660)
DNA (1344bp) protein (448aa)
tRNA-i(6)A37 thiotransferase enzyme MiaB; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB id=3887630 bin=GWC2_Methylomirabilis_70_24 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
13_1_40cm_2_scaffold_1306_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23784..25019)
DNA (1236bp) protein (412aa)
hypothetical protein; K01622 fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
fbp; bifunctional fructose-1,6-bisphosphatase (EC:3.1.3.11) id=14628042 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_1306_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25907..26275
DNA (369bp) protein (123aa)
Operon regulator n=1 Tax=Rhodobacter sphaeroides RepID=O30830_RHOSH
transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
smoC; Operon regulator SmoC
Displaying items 1-30 of 40 in total

View Taxonomy