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13_1_40cm_2_scaffold_192

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Displaying 22 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_192_trna_1
unknown

Not on your lists

comp(60..131)
DNA (72bp)
transferRNA
13_1_40cm_2_scaffold_192_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(190..1188)
DNA (999bp) protein (333aa)
galactose-1-phosphate uridylyltransferase; K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] Tax=GWA2_Rokubacteria_73_35_curated
Galactose-1-phosphate uridylyltransferase id=3919817 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
galactose-1-phosphate uridylyltransferase
13_1_40cm_2_scaffold_192_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1205..2194)
DNA (990bp) protein (330aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] Tax=GWA2_Rokubacteria_73_35_curated
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] id=3919822 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_192_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2191..2787)
DNA (597bp) protein (199aa)
Glycerol-3-phosphate acyltransferase; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Glycerol-3-phosphate acyltransferase id=3919825 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-phosphate glycerol-3-phosphate acyltransferase
13_1_40cm_2_scaffold_192_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2784..3353)
DNA (570bp) protein (190aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase) (PGP synthase) (EC:2.7.8.5) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase) (PGP synthase) (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase id=3919891 bin=GWA2_Methylomirabilis_73_35 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_192_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3350..4105)
DNA (756bp) protein (252aa)
2-phosphosulfolactate phosphatase (EC:3.1.3.71); K05979 2-phosphosulfolactate phosphatase [EC:3.1.3.71] Tax=GWA2_Rokubacteria_73_35_curated
Probable 2-phosphosulfolactate phosphatase id=3919892 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-phosphosulfolactate phosphatase
13_1_40cm_2_scaffold_192_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4109..5314)
DNA (1206bp) protein (402aa)
argG; Argininosuccinate synthase (Citrulline--aspartate ligase) (EC:6.3.4.5) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
argG; Argininosuccinate synthase (Citrulline--aspartate ligase) (EC:6.3.4.5)
Argininosuccinate synthase id=4819282 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_192_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5307..6230)
DNA (924bp) protein (308aa)
ornithine carbamoyltransferase; K00611 ornithine carbamoyltransferase [EC:2.1.3.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ornithine carbamoyltransferase id=3919894 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ornithine carbamoyltransferase
13_1_40cm_2_scaffold_192_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6227..7441)
DNA (1215bp) protein (405aa)
argD; acetylornithine transaminase (NAcOATase and DapATase), PLP-dependent (EC:2.6.1.17 2.6.1.11) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
argD; acetylornithine transaminase (NAcOATase and DapATase), PLP-dependent (EC:2.6.1.17 2.6.1.11) id=14626235 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
argD; acetylornithine transaminase (NAcOATase and DapATase), PLP-dependent (EC:2.6.1.17 2.6.1.11)
13_1_40cm_2_scaffold_192_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7438..8307)
DNA (870bp) protein (290aa)
acetylglutamate kinase (EC:2.7.2.8); K00930 acetylglutamate kinase [EC:2.7.2.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase id=3919897 bin=GWA2_Methylomirabilis_73_35 species=Thermovibrio ammonificans genus=Thermovibrio taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_192_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8445..9800)
DNA (1356bp) protein (452aa)
ATP-dependent protease ATPase subunit HslU id=3919900 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hslU; ATPase component of the HslUV protease, also functions as molecular chaperone; heat shock protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hslU; ATPase component of the HslUV protease, also functions as molecular chaperone; heat shock protein
13_1_40cm_2_scaffold_192_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9952..10491)
DNA (540bp) protein (180aa)
ATP-dependent protease peptidase subunit; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hslV; heat shock protein hslUV, peptidase component (EC:3.4.25.-)
ATP-dependent protease subunit HslV id=4765391 bin=GWC2_Methylomirabilis_70_24 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_2_scaffold_192_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10491..11378)
DNA (888bp) protein (296aa)
tyrosine recombinase XerD subunit; K03733 integrase/recombinase XerC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
site-specific recombinase, XerC; K03733 integrase/recombinase XerC id=14626231 bin=bin7_NC10_sister species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
recombinase XerC
13_1_40cm_2_scaffold_192_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11375..13615)
DNA (2241bp) protein (747aa)
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA topoisomerase id=3919910 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA topoisomerase I
13_1_40cm_2_scaffold_192_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13615..14559)
DNA (945bp) protein (315aa)
transcriptional regulator, MarR family; K04096 DNA processing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA processing chain A (DprA/Smf) id=3806661 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dprA; DNA protection single-strand-binding protein DprA
13_1_40cm_2_scaffold_192_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14578..15372)
DNA (795bp) protein (265aa)
TPR repeat-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
tetratricopeptide domain-containing protein id=14626228 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
conserved exported protein of unknown function
13_1_40cm_2_scaffold_192_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15460..16659)
DNA (1200bp) protein (400aa)
molybdenum cofactor synthesis protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] Tax=GWA2_Rokubacteria_73_35_curated
Molybdenum cofactor synthesis domain protein id=3806663 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdenum cofactor synthesis protein
13_1_40cm_2_scaffold_192_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16694..17803)
DNA (1110bp) protein (370aa)
mopC; protein MopC Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
MopC id=3806664 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mopC; protein MopC
13_1_40cm_2_scaffold_192_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17940..18446)
DNA (507bp) protein (169aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alcohol dehydrogenase large subunit id=3806665 bin=GWA2_Methylomirabilis_73_35 species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative uncharacterized protein
13_1_40cm_2_scaffold_192_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18443..18955)
DNA (513bp) protein (171aa)
Hypothetical membrane protein id=3806666 bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical membrane protein Tax=GWA2_Rokubacteria_73_35_curated
Protein of unknown function DUF3341
13_1_40cm_2_scaffold_192_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18942..20291)
DNA (1350bp) protein (450aa)
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] id=14626218 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
hypothetical protein
13_1_40cm_2_scaffold_192_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20371..22506)
DNA (2136bp) protein (712aa)
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] id=14626217 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
molybdopterin oxidoreductase Fe4S4 region
Displaying 22 items

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