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13_1_40cm_2_scaffold_2179

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_2179_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

2..667
DNA (666bp) protein (222aa)
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC transporter ATP-binding protein id=4505181 bin=GWF2_Methylomirabilis_70_14 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_2_scaffold_2179_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

667..1374
DNA (708bp) protein (236aa)
branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC transporter related protein id=3368248 bin=GWA2_Methylomirabilis_73_35 species=Afipia sp. 1NLS2 genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
high-affinity branched-chain amino acid transport ATP-binding proteinlivF (LIV-I protein F)
13_1_40cm_2_scaffold_2179_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

1380..2246
DNA (867bp) protein (289aa)
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein id=14625213 bin=bin7_NC10_sister species=Haloterrigena turkmenica genus=Haloterrigena taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10 rbh
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=CSP1_6_Rokubacteria
amino acid/amide ABC transporter membrane protein 1, HAAT family
13_1_40cm_2_scaffold_2179_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

2565..3137
DNA (573bp) protein (191aa)
ABC transporter permease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein id=14625214 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ABC transporter permease
13_1_40cm_2_scaffold_2179_5
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3149..3547)
DNA (399bp) protein (133aa)
multi-sensor hybrid histidine kinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C53D1
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
histidine kinase
13_1_40cm_2_scaffold_2179_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3652..5559)
DNA (1908bp) protein (636aa)
two component system sensor histidine kinase (EC:2.7.13.3)
integral membrane sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component system sensor histidine kinase id=3368252 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_2179_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5579..7207)
DNA (1629bp) protein (543aa)
ABC-type dipeptide transport system, periplasmic component id=2654072 bin=GWC2_Methylomirabilis_70_24 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC-type dipeptide transport system, periplasmic component Tax=GWA2_Rokubacteria_73_35_curated
ABC-type dipeptide transport system, periplasmic component
13_1_40cm_2_scaffold_2179_8
unknown

Not on your lists

comp(7249..7380)
DNA (132bp) protein (44aa)

This feature has no annotations

13_1_40cm_2_scaffold_2179_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7665..9086)
DNA (1422bp) protein (474aa)
two component, sigma54 specific, transcriptional regulator, Fis family; K07714 two-component system, NtrC family, response regulator AtoC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component system response regulator, sigma54-specific id=4571215 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component system response regulator, sigma54-specific
13_1_40cm_2_scaffold_2179_10
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(9108..9506)
DNA (399bp) protein (133aa)
automatic annotation Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Automatic annotation id=4571209 bin=GWF2_Methylomirabilis_70_14 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_2179_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

9612..11132
DNA (1521bp) protein (507aa)
transcriptional regulator id=14625658 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
transcriptional regulator Tax=CSP1_6_Rokubacteria
Mg chelatase subunit ChlI
13_1_40cm_2_scaffold_2179_12
unknown

Not on your lists

11269..11559
DNA (291bp) protein (97aa)

This feature has no annotations

13_1_40cm_2_scaffold_2179_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

11686..13110
DNA (1425bp) protein (475aa)
group 1 glycosyl transferase id=14625816 bin=bin7_NC10_sister species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
group 1 glycosyl transferase Tax=CSP1_6_Rokubacteria
group 1 glycosyl transferase
13_1_40cm_2_scaffold_2179_14
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13158..13541)
DNA (384bp) protein (128aa)
Response regulator n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XNY9_SORCE
response regulator
Response regulator {ECO:0000313|EMBL:AGP32368.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellul
13_1_40cm_2_scaffold_2179_15
Rhodopirellula baltica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

13935..14660
DNA (726bp) protein (242aa)
membrane-associated phospholipid phosphatase (EC:3.1.3.27)
Membrane-associated phospholipid phosphatase n=2 Tax=Rhodopirellula baltica RepID=Q7UIY3_RHOBA
Phosphoesterase PA-phosphatase related protein {ECO:0000313|EMBL:EKK00768.1}; TaxID=993517 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" sou
13_1_40cm_2_scaffold_2179_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15200..15985
DNA (786bp) protein (262aa)
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Multi-sensor hybrid histidine kinase id=4549114 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_2179_17
unknown

Not on your lists

16082..16579
DNA (498bp) protein (166aa)

This feature has no annotations

13_1_40cm_2_scaffold_2179_18
unknown

Not on your lists

16655..16849
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_40cm_2_scaffold_2179_19
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17066..17713)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SRF3_9DELT
hypothetical protein
Tax=BJP_IG2102_Syntrophobacterales_60_12
13_1_40cm_2_scaffold_2179_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

18186..18416
DNA (231bp) protein (77aa)
Isochorismatase hydrolase id=3268091 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Methylotenera taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
isochorismatase hydrolase Tax=GWC2_Rokubacteria_70_16_curated
isochorismatase hydrolase
Displaying 20 items

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