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13_1_40cm_2_scaffold_236

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_236_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1..336)
DNA (336bp) protein (112aa)
Translation initiation factor IF-2 id=1723423 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
infB; translation initiation factor IF-2 Tax=GWA2_Rokubacteria_73_35_curated
translation initiation factor IF-2
13_1_40cm_2_scaffold_236_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(645..1973)
DNA (1329bp) protein (443aa)
NusA antitermination factor id=1723421 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NusA antitermination factor; K02600 N utilization substance protein A Tax=GWA2_Rokubacteria_73_35_curated
NusA antitermination factor
13_1_40cm_2_scaffold_236_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1970..2443)
DNA (474bp) protein (158aa)
Ribosome maturation factor RimP id=1723420 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_2_scaffold_236_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(2525..4222)
DNA (1698bp) protein (566aa)
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15) id=14625411 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15)
13_1_40cm_2_scaffold_236_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4227..4559)
DNA (333bp) protein (111aa)
ferredoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ferredoxin id=3388822 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ferredoxin
13_1_40cm_2_scaffold_236_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4559..5659)
DNA (1101bp) protein (367aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase id=4153759 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_1_40cm_2_scaffold_236_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5669..7033)
DNA (1365bp) protein (455aa)
rseP; regulator of sigma E protease (EC:3.4.24.-); K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rseP; regulator of sigma E protease (EC:3.4.24.-); K11749 regulator of sigma E protease [EC:3.4.24.-] id=14625408 bin=bin7_NC10_sister species=Thioalkalivibrio sp. ALJ24 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rseP; regulator of sigma E protease (EC:3.4.24.-)
13_1_40cm_2_scaffold_236_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7039..8208)
DNA (1170bp) protein (390aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] id=14625407 bin=bin7_NC10_sister species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
13_1_40cm_2_scaffold_236_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8205..9035)
DNA (831bp) protein (277aa)
cdsA; phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41] Tax=GWA2_Rokubacteria_73_35_curated
Phosphatidate cytidylyltransferase id=2265690 bin=GWA2_Methylomirabilis_73_35 species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
phosphatidate cytidylyltransferase
13_1_40cm_2_scaffold_236_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9052..9834)
DNA (783bp) protein (261aa)
uppS; UDP pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
uppS; UDP pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase id=2265665 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_236_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9849..10403)
DNA (555bp) protein (185aa)
ribosome recycling factor; K02838 ribosome recycling factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribosome-recycling factor id=2265664 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio fructosivorans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
frr; ribosome recycling factor
13_1_40cm_2_scaffold_236_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10425..11159)
DNA (735bp) protein (245aa)
pyrH; uridylate kinase (EC:2.7.4.-); K09903 uridylate kinase [EC:2.7.4.22] Tax=GWA2_Rokubacteria_73_35_curated
Uridylate kinase id=2265663 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyrH; uridylate kinase
13_1_40cm_2_scaffold_236_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(11162..11767)
DNA (606bp) protein (202aa)
translation elongation factor Ts; K02357 elongation factor Ts Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Elongation factor Ts id=2265662 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tsf; elongation factor Ts
13_1_40cm_2_scaffold_236_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(11770..12531)
DNA (762bp) protein (254aa)
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S2 id=2265661 bin=GWA2_Methylomirabilis_73_35 species=Salimicrobium sp. MJ3 genus=Salimicrobium taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsB; 30S ribosomal protein S2
13_1_40cm_2_scaffold_236_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(12682..13938)
DNA (1257bp) protein (419aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_cur
Arginine biosynthesis bifunctional protein ArgJ id=2265660 bin=GWA2_Methylomirabilis_73_35 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ArgJ; N-acetylglutamate synthase
13_1_40cm_2_scaffold_236_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13938..14999)
DNA (1062bp) protein (354aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] Tax=GWA2_Rokubacteria_73_35_curated
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase id=2265658 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_236_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(15007..15402)
DNA (396bp) protein (132aa)
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S9 id=2265656 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S9
13_1_40cm_2_scaffold_236_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(15402..15857)
DNA (456bp) protein (152aa)
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L13 id=2265654 bin=GWA2_Methylomirabilis_73_35 species=Bacillus azotoformans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplM; large subunit ribosomal protein L13
13_1_40cm_2_scaffold_236_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15970..16623)
DNA (654bp) protein (218aa)
nth; endonuclease III (EC:4.2.99.18) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
nth; endonuclease III (EC:4.2.99.18) id=14625396 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
nth; endonuclease III (EC:4.2.99.18)
13_1_40cm_2_scaffold_236_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16642..17061)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBV3_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_2_scaffold_236_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17058..18215)
DNA (1158bp) protein (386aa)
Aminotransferase class I and II id=2265644 bin=GWA2_Methylomirabilis_73_35 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aspartate aminotransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aspartate aminotransferase
13_1_40cm_2_scaffold_236_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18212..18775)
DNA (564bp) protein (188aa)
glycosyl transferase family 2 protein (EC:2.4.1.-); K00729 dolichyl-phosphate beta-glucosyltransferase [EC:2.4.1.117] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glycosyl transferase, family 2 id=2265642 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UDP-glucose--undecaprenyl-phosphate glucosyltransferase
13_1_40cm_2_scaffold_236_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18723..19748)
DNA (1026bp) protein (342aa)
malate dehydrogenase; K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
malate dehydrogenase (EC:1.1.1.40)
Malate dehydrogenase (Oxaloacetate decarboxylating) id=2265641 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_236_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19709..20224)
DNA (516bp) protein (172aa)
malate dehydrogenase; K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
malate dehydrogenase; K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] id=14625391 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
malate dehydrogenase (EC:1.1.1.38)
13_1_40cm_2_scaffold_236_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20224..21450)
DNA (1227bp) protein (409aa)
hypothetical protein; K03742 competence/damage-inducible protein CinA Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein; K03742 competence/damage-inducible protein CinA id=14625388 bin=bin7_NC10_sister species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
competence/damage-inducible protein CinA
13_1_40cm_2_scaffold_236_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21667..23166
DNA (1500bp) protein (500aa)
rpoD; RNA polymerase sigma factor rpoD; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor id=3388592 bin=GWC2_Methylomirabilis_70_24 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rpoD; RNA polymerase sigma-70 factor RpoD
13_1_40cm_2_scaffold_236_27
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(23383..23898)
DNA (516bp) protein (172aa)
DinB family protein id=14625385 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
DinB family protein Tax=CSP1_6_Rokubacteria
DinB family protein
13_1_40cm_2_scaffold_236_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23910..24125)
DNA (216bp) protein (72aa)
biotin/lipoic acid binding domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Biotin/lipoyl attachment domain-containing protein id=4153683 bin=GWC2_Methylomirabilis_70_16 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
biotin/lipoyl attachment domain-containing protein
13_1_40cm_2_scaffold_236_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24118..25464)
DNA (1347bp) protein (449aa)
Carbamoyl-phosphate synthase L chain ATP-binding protein; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] Tax=GWA2_Rokubacteria_73_35_curated
Carbamoyl-phosphate synthase L chain ATP-binding protein id=4748227 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Carbamoyl-phosphate synthase L chain ATP-binding protein
13_1_40cm_2_scaffold_236_30
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(25464..26378)
DNA (915bp) protein (305aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Uncharacterized protein id=3782407 bin=GWF2_Methylomirabilis_70_14 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying items 1-30 of 31 in total

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