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13_1_40cm_2_scaffold_532

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Displaying items 1-30 of 40 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_532_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(2..1087)
DNA (1086bp) protein (362aa)
Histidine kinase (EC:2.7.13.3)
multi-sensor signal transduction histidine kinase id=14626073 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
multi-sensor signal transduction histidine kinase Tax=CSP1_6_Rokubacteria
13_1_40cm_2_scaffold_532_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(1089..1802)
DNA (714bp) protein (238aa)
ABC-type branched-chain amino acid transport systems, ATPase component id=2972530 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
LivF; ABC-type branched-chain amino acid transport systems, ATPase component; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWC2_Rokubacteria_70_16_curated
amino acid ABC transporter ATP-binding protein
13_1_40cm_2_scaffold_532_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(1780..2481)
DNA (702bp) protein (234aa)
putative branched-chain amino acid ABC transporter, ATP-binding component (livG-like); K01995 branched-chain amino acid transport system ATP-binding protein id=14626071 bin=bin7_NC10_sister species=Geopsychrobacter electrodiphilus genus=Geopsychrobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
putative branched-chain amino acid ABC transporter, ATP-binding component (livG-like); K01995 branched-chain amino acid transport system ATP-binding protein Tax=CSP1_6_Rokubacteria
putative branched-chain amino acid ABC transporter, ATP-binding component (livG-like)
13_1_40cm_2_scaffold_532_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(2481..3425)
DNA (945bp) protein (315aa)
ABC-type transport system permease protein (Probable substrate branched-chain amino acids) id=4915466 bin=GWC2_Methylomirabilis_70_24 species=Halosarcina pallida genus=Halosarcina taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
livM5; branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
branched-chain amino acid ABC transporter permease
13_1_40cm_2_scaffold_532_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3434..4207)
DNA (774bp) protein (258aa)
Branched-chain amino acid ABC-type transport system, permease components id=4915465 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
branched chain amino acid ABC transporter; K01997 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
branched chain amino acid ABC transporter permease
13_1_40cm_2_scaffold_532_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(4306..5529)
DNA (1224bp) protein (408aa)
ABC-type branched-chain amino acid transport systems; K01999 branched-chain amino acid transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC-type branched-chain amino acid transport systems id=2644242 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC-type branched-chain amino acid transport systems
13_1_40cm_2_scaffold_532_7
unknown

Not on your lists

comp(5571..5693)
DNA (123bp) protein (41aa)

This feature has no annotations

13_1_40cm_2_scaffold_532_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5760..6908)
DNA (1149bp) protein (383aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Butyryl-CoA dehydrogenase id=1703889 bin=GWA2_Methylomirabilis_73_35 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_2_scaffold_532_9
unknown

Not on your lists

comp(6898..7011)
DNA (114bp) protein (38aa)

This feature has no annotations

13_1_40cm_2_scaffold_532_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(7011..7316)
DNA (306bp) protein (102aa)
N-acetyltransferase GCN5 id=14626533 bin=bin7_NC10_sister species=Nakamurella multipartita genus=Nakamurella taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
N-acetyltransferase GCN5 Tax=CSP1_6_Rokubacteria
acetyl coenzyme A synthetase subunit alpha
13_1_40cm_2_scaffold_532_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7313..8575)
DNA (1263bp) protein (421aa)
phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
phenylacetate--CoA ligase (EC:6.2.1.30)
Phenylacetate--CoA ligase id=1703891 bin=GWA2_Methylomirabilis_73_35 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_532_12
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(8578..9627)
DNA (1050bp) protein (350aa)
Glucose sorbosone dehydrogenase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SPQ4_9BACT
Glucose sorbosone dehydrogenase {ECO:0000313|EMBL:BAL58140.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
glucose sorbosone dehydrogenase
13_1_40cm_2_scaffold_532_13
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9761..10114
DNA (354bp) protein (118aa)
dhmA2; Haloalkane dehalogenase 2 (EC:3.8.1.5)
Putative hydrolase or acyltransferase n=1 Tax=Mycobacterium colombiense CECT 3035 RepID=J4TD74_9MYCO
Alpha/beta hydrolase fold {ECO:0000313|EMBL:CEL20631.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126
13_1_40cm_2_scaffold_532_14
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

10163..10672
DNA (510bp) protein (170aa)
Enoyl-CoA hydratase/isomerase id=3956319 bin=GWC2_Methylomirabilis_70_24 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
id=3864200 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_2_scaffold_532_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10676..11785)
DNA (1110bp) protein (370aa)
Opine dehydrogenase (EC:1.5.1.28) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
opine dehydrogenase (EC:1.5.1.28)
NAD-dependent glycerol-3-phosphate dehydrogenase-like protein id=1703904 bin=GWA2_Methylomirabilis_73_35 species=Achromobacter xylosoxidans genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_532_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11782..12975)
DNA (1194bp) protein (398aa)
Formyl-CoA transferase (EC:2.8.3.16); K07749 formyl-CoA transferase [EC:2.8.3.16] Tax=GWA2_Rokubacteria_73_35_curated
Formyl-CoA transferase id=1703945 bin=GWA2_Methylomirabilis_73_35 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
L-carnitine dehydratase/bile acid-inducible protein F
13_1_40cm_2_scaffold_532_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12972..15314)
DNA (2343bp) protein (781aa)
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein (EC:1.17.1.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein (EC:1.17.1.4)
Xanthine dehydrogenase id=4849835 bin=GWC2_Methylomirabilis_70_16 species=Magnetospirillum sp. SO-1 genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_1_40cm_2_scaffold_532_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(15471..17066)
DNA (1596bp) protein (532aa)
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] id=14628013 bin=bin7_NC10_sister species=Ferroglobus placidus genus=Ferroglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2)
13_1_40cm_2_scaffold_532_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(17063..17443)
DNA (381bp) protein (127aa)
cobalamin B12-binding domain-containing protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Cobalamin B12-binding domain protein id=1703951 bin=GWA2_Methylomirabilis_73_35 species=Thermotoga lettingae genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cobalamin B12-binding domain-containing protein
13_1_40cm_2_scaffold_532_20
Massilia consociata, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17619..18107)
DNA (489bp) protein (163aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=760117 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Mas
Phosphodiesterase, MJ0936 family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3M4_VARPE
phosphodiesterase
13_1_40cm_2_scaffold_532_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(18104..18532)
DNA (429bp) protein (143aa)
putative nucleic-acid-binding protein containing a Zn-ribbon Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=1703953 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative nucleic-acid-binding protein containing a Zn-ribbon
13_1_40cm_2_scaffold_532_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18529..19668)
DNA (1140bp) protein (380aa)
acetyl-CoA acetyltransferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Propanoyl-CoA C-acyltransferase id=4849830 bin=GWC2_Methylomirabilis_70_16 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acetyl-CoA acetyltransferase
13_1_40cm_2_scaffold_532_23
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(19681..20841)
DNA (1161bp) protein (387aa)
Acyl-CoA dehydrogenase domain protein id=3457494 bin=GWF2_Methylomirabilis_70_14 species=Ferroglobus placidus genus=Ferroglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase domain protein Tax=GWA2_Rokubacteria_70_23_curated
acyl-CoA dehydrogenase domain protein
13_1_40cm_2_scaffold_532_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20838..22571)
DNA (1734bp) protein (578aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] id=14627495 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
5-oxoprolinase (EC:3.5.2.9)
13_1_40cm_2_scaffold_532_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22568..24637)
DNA (2070bp) protein (690aa)
hyuA; N-methylhydantoinase A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase (ATP-hydrolyzing) id=4849827 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
N-methylhydantoinase
13_1_40cm_2_scaffold_532_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(24642..25367)
DNA (726bp) protein (242aa)
phophonate C-P lyase system transcriptional regulator PhnF, GntR family; K03710 GntR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Transcriptional regulator, GntR family id=4849826 bin=GWC2_Methylomirabilis_70_16 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
phophonate C-P lyase system transcriptional regulator PhnF, GntR family
13_1_40cm_2_scaffold_532_27
unknown

Not on your lists

comp(25481..25849)
DNA (369bp) protein (123aa)

This feature has no annotations

13_1_40cm_2_scaffold_532_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(25999..26862)
DNA (864bp) protein (288aa)
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=GWA2_Rokubacteria_73_35_curated
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] id=14626066 bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10 rbh
3-hydroxybutyryl-CoA dehydrogenase
13_1_40cm_2_scaffold_532_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(26948..27268)
DNA (321bp) protein (107aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4741179 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_532_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(27302..27826)
DNA (525bp) protein (175aa)
apt; adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7] Tax=GWA2_Rokubacteria_73_35_curated
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase id=3474236 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 40 in total

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