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13_1_40cm_2_scaffold_78

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Displaying items 1-30 of 40 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_78_1
unknown

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2..118
DNA (117bp) protein (39aa)

This feature has no annotations

13_1_40cm_2_scaffold_78_2
unknown

Not on your lists

115..708
DNA (594bp) protein (198aa)

This feature has no annotations

13_1_40cm_2_scaffold_78_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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787..2847
DNA (2061bp) protein (687aa)
TonB-dependent receptor, possible Cobalamin transporter n=1 Tax=Candidatus Nitrospira defluvii PF18_9BACT">RepID=D8PF18_9BACT
putative TonB-dependent receptor Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
tonB-dependent receptor, possible Cobalamin transporter
13_1_40cm_2_scaffold_78_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2892..3638
DNA (747bp) protein (249aa)
Methyltransferase id=4213634 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative methyltransferase type 11 Tax=GWA2_Rokubacteria_73_35_curated
putative methyltransferase type 11
13_1_40cm_2_scaffold_78_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3678..4670
DNA (993bp) protein (331aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=GWA2_Rokubacteria_73_35_curated
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase id=4213632 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_78_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4683..5309
DNA (627bp) protein (209aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4213630 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_78_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5479..7095
DNA (1617bp) protein (539aa)
putative regulatory protein Tax=GWA2_Rokubacteria_73_35_curated
Urea amidolyase related protein id=1307297 bin=GWE1_Spirochaete_60_18 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes rbh
allophanate hydrolase
13_1_40cm_2_scaffold_78_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7095..8420
DNA (1326bp) protein (442aa)
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] id=14628094 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10 rbh
class III aminotransferase
13_1_40cm_2_scaffold_78_9
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

8426..9214
DNA (789bp) protein (263aa)
Lactam utilization-like protein (lamB); K07160 UPF0271 protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Lactam utilization-like protein (lamB); K07160 UPF0271 protein id=14628095 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
LamB/YcsF family protein
13_1_40cm_2_scaffold_78_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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9231..10346
DNA (1116bp) protein (372aa)
gcvT; glycine cleavage system aminomethyltransferase T; K00605 aminomethyltransferase [EC:2.1.2.10] Tax=GWA2_Rokubacteria_73_35_curated
Aminomethyltransferase id=4193474 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycine cleavage system protein T
13_1_40cm_2_scaffold_78_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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10404..10796
DNA (393bp) protein (131aa)
glycine cleavage system protein H id=4193475 bin=GWA2_Methylomirabilis_73_35 species=Bacillus sp. m3-13 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycine cleavage system protein H; K02437 glycine cleavage system H protein Tax=GWA2_Rokubacteria_73_35_curated
glycine cleavage system H protein
13_1_40cm_2_scaffold_78_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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10796..12139
DNA (1344bp) protein (448aa)
gcvPA; GcvPA; K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] Tax=GWA2_Rokubacteria_73_35_curated
protein GcvPA; K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] id=14628076 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
glycine dehydrogenase subunit 1 (EC:1.4.4.2)
13_1_40cm_2_scaffold_78_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

12139..13611
DNA (1473bp) protein (491aa)
glycine dehydrogenase subunit 2 (EC:1.4.4.2); K00283 glycine dehydrogenase subunit 2 [EC:1.4.4.2] id=14628075 bin=bin7_NC10_sister species=Geobacillus sp. GHH01 genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
glycine dehydrogenase subunit 2 (EC:1.4.4.2); K00283 glycine dehydrogenase subunit 2 [EC:1.4.4.2] Tax=CSP1_6_Rokubacteria
glycine dehydrogenase subunit 2 (EC:1.4.4.2)
13_1_40cm_2_scaffold_78_14
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13757..14227)
DNA (471bp) protein (157aa)
Cupin region n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GV5_POLSJ
hypothetical protein
Cupin region {ECO:0000313|EMBL:ABE42237.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas s
13_1_40cm_2_scaffold_78_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14499..15299
DNA (801bp) protein (267aa)
lipoate protein ligase; K03800 lipoate-protein ligase A [EC:2.7.7.63] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Octanoyltransferase LipM id=5020377 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
biotin/lipoate A/B protein ligase
13_1_40cm_2_scaffold_78_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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15324..15764
DNA (441bp) protein (147aa)
NUDIX family hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NUDIX family hydrolase id=5020378 bin=GWA2_Methylomirabilis_73_35 species=Thermoproteus tenax genus=Thermoproteus taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NUDIX family hydrolase
13_1_40cm_2_scaffold_78_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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15787..17274
DNA (1488bp) protein (496aa)
cytosol aminopeptidase (LAP) (Leucyl aminopeptidase) PepA (EC:3.4.11.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pepA; leucyl aminopeptidase (EC:3.4.11.1)
Probable cytosol aminopeptidase id=5020379 bin=GWA2_Methylomirabilis_73_35 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_40cm_2_scaffold_78_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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17271..18116
DNA (846bp) protein (282aa)
PHP domain protein id=5020380 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PHP domain-containing protein; K07053 Tax=GWA2_Rokubacteria_73_35_curated
PHP domain-containing protein
13_1_40cm_2_scaffold_78_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18113..18454
DNA (342bp) protein (114aa)
ArsC family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ArsC family protein id=5020381 bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
arsenate reductase like protein
13_1_40cm_2_scaffold_78_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

18563..18850
DNA (288bp) protein (96aa)
carboxymethylenebutenolidase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=GWC2_Rokubacteria_70_16_curated
Carboxymethylenebutenolidase id=4712286 bin=GWC2_Methylomirabilis_70_16 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_78_21
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(19254..19643)
DNA (390bp) protein (130aa)
hypothetical protein id=14628067 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_2_scaffold_78_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(19693..20631)
DNA (939bp) protein (313aa)
Thioesterase superfamily protein id=5020384 bin=GWA2_Methylomirabilis_73_35 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Thioesterase superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_2_scaffold_78_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20663..21811
DNA (1149bp) protein (383aa)
transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member Tax=GWA2_Rokubacteria_73_35_curated
Putative transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member id=4165967 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member
13_1_40cm_2_scaffold_78_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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21935..22450
DNA (516bp) protein (172aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=5020386 bin=GWA2_Methylomirabilis_73_35 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_78_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22455..23396
DNA (942bp) protein (314aa)
26S proteasome subunit P45 family (EC:3.6.4.3) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Proteasome-activating nucleotidase id=4165965 bin=GWF2_Methylomirabilis_70_14 species=Thermosphaera aggregans genus=Thermosphaera taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pan; proteasome-activating nucleotidase
13_1_40cm_2_scaffold_78_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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23406..23825
DNA (420bp) protein (140aa)
thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4830683 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
thioesterase superfamily protein
13_1_40cm_2_scaffold_78_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23856..24839
DNA (984bp) protein (328aa)
ABC transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related id=4165962 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_2_scaffold_78_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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24836..25603
DNA (768bp) protein (256aa)
multi-copper enzyme maturation ABC transporter permease Tax=GWA2_Rokubacteria_73_35_curated
multi-copper enzyme maturation ABC transporter permease id=14626740 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
multi-copper enzyme maturation ABC transporter permease
13_1_40cm_2_scaffold_78_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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25605..27158
DNA (1554bp) protein (518aa)
gliding motility ABC transporter auxillary protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative ABC-type uncharacterized transport system involved in gliding motility auxiliary component-like id=4034167 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gliding motility ABC transporter auxillary protein
13_1_40cm_2_scaffold_78_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

27163..28929
DNA (1767bp) protein (589aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626738 bin=bin7_NC10_sister species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Displaying items 1-30 of 40 in total

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