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13_1_40cm_2_scaffold_1439

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Displaying 20 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1439_1
Rhodococcus rhodochrous, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(24..473)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI00037B8512
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ETT24929.1}; TaxID=1429046 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus rhodochrous A
AraC family transcriptional regulator
13_1_40cm_2_scaffold_1439_2
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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comp(470..1147)
DNA (678bp) protein (226aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TTA3_9CHLR
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:EFH83654.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="
xylose isomerase domain-containing protein
13_1_40cm_2_scaffold_1439_3
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

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comp(1673..1930)
DNA (258bp) protein (86aa)
Tax=RBG_16_RIF_CHLX_72_14_curated
13_1_40cm_2_scaffold_1439_4
unknown

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2014..2313
DNA (300bp) protein (100aa)

This feature has no annotations

13_1_40cm_2_scaffold_1439_5
unknown

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2337..2717
DNA (381bp) protein (127aa)

This feature has no annotations

13_1_40cm_2_scaffold_1439_6
unknown

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comp(3191..3547)
DNA (357bp) protein (119aa)

This feature has no annotations

13_1_40cm_2_scaffold_1439_7
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3570..4574)
DNA (1005bp) protein (335aa)
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3); K07642 two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] Tax=RBG_16_Gammaproteobacteria_66_13_c
histidine kinase (EC:2.7.13.3); K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3] id=1247318 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3)
13_1_40cm_2_scaffold_1439_8
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(4685..5386)
DNA (702bp) protein (234aa)
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SQV1_9BACT id=1247317 bin=RBG9 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG9 organism_group=Chloroflexi
winged helix family two component transcriptional regulator Tax=RBG_16_RIF_CHLX_69_14_curated
winged helix family two component transcriptional regulator
13_1_40cm_2_scaffold_1439_9
unknown

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comp(5441..5875)
DNA (435bp) protein (145aa)

This feature has no annotations

13_1_40cm_2_scaffold_1439_10
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(5933..6760)
DNA (828bp) protein (276aa)
retinol dehydrogenase (EC:1.1.1.105) id=1245681 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
retinol dehydrogenase (EC:1.1.1.105) Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
dehydrogenase
13_1_40cm_2_scaffold_1439_11
unknown

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comp(6811..7308)
DNA (498bp) protein (166aa)

This feature has no annotations

13_1_40cm_2_scaffold_1439_12
unknown

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comp(7305..7733)
DNA (429bp) protein (143aa)

This feature has no annotations

13_1_40cm_2_scaffold_1439_13
Streptomyces sp. WM6386, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(7871..8728)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI0003782745
N5,N10-methylene tetrahydromethanopterin reductase {ECO:0000313|EMBL:KKD08742.1}; TaxID=1415558 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptom
MmcJ protein
13_1_40cm_2_scaffold_1439_14
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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comp(8753..9451)
DNA (699bp) protein (233aa)
Putative ABC transporter ATP-binding protein id=4424656 bin=GWC2_Chloroflexi_73_18 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
putative ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein Tax=GWC2_RIF_CHLX_73_18_curated
phosphonate-transporting ATPase
13_1_40cm_2_scaffold_1439_15
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(9456..10655)
DNA (1200bp) protein (400aa)
ABC transporter permease; K02004 putative ABC transport system permease protein Tax=GWC2_RIF_CHLX_73_18_curated
Putative ABC transporter permease protein id=4424655 bin=GWC2_Chloroflexi_73_18 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
ABC transporter permease
13_1_40cm_2_scaffold_1439_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

11014..11310
DNA (297bp) protein (99aa)
Putative LysE/RhtB family amino acid efflux pump id=4956289 bin=GWC2_Methylomirabilis_70_16 species=Oscillatoria sp. PCC 6506 genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
lysine exporter protein (LYSE/YGGA) Tax=GWC2_Rokubacteria_70_16_curated
lysine exporter protein LysE/YggA
13_1_40cm_2_scaffold_1439_17
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

11350..12252
DNA (903bp) protein (301aa)
Phenazine biosynthesis protein PhzF family n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C9F9_SPHTD
phenazine biosynthesis protein PhzF family
Phenazine biosynthesis protein PhzF family {ECO:0000313|EMBL:ACZ40452.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sph
13_1_40cm_2_scaffold_1439_18

Not on your lists

12249..12755
DNA (507bp) protein (169aa)
Proline reductase n=1 Tax=uncultured organism RepID=M1Q217_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KKL27182.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Glycine/sarcosine/betaine reductase selenoprotein B (GRDB)
13_1_40cm_2_scaffold_1439_19
RBG_16_Chloroflexi_48_8_curated, Chloroflexi, Bacteria

Not on your lists

12780..13136
DNA (357bp) protein (119aa)
D-proline reductase (EC:1.21.4.1) Tax=RBG_16_Chloroflexi_48_8_curated
D-proline reductase (EC:1.21.4.1)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00035E44DD
13_1_40cm_2_scaffold_1439_20
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(13138..13488)
DNA (351bp) protein (117aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJ77_SINAD
methionine-R-sulfoxide reductase
Displaying 20 items

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