ggKbase home page

13_1_40cm_2_scaffold_1863

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1863_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

89..2641
DNA (2553bp) protein (851aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GEJ8_GEOUR
hypothetical protein; K02004 putative ABC transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_2_scaffold_1863_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

2634..3386
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WSL2_GEOS8
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_2_scaffold_1863_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

3428..4633
DNA (1206bp) protein (402aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_2_scaffold_1863_4
unknown

Not on your lists

4659..4889
DNA (231bp) protein (77aa)

This feature has no annotations

13_1_40cm_2_scaffold_1863_5
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

4886..5167
DNA (282bp) protein (94aa)
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_5
gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C id=4178835 bin=GWA2_Ignavibacteria_55_11 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
13_1_40cm_2_scaffold_1863_6
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

5164..6606
DNA (1443bp) protein (481aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_12_FULL_Acidobacteri
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
glutamyl-tRNA(Gln) amidotransferase n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI000361E3E8
13_1_40cm_2_scaffold_1863_7
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

6637..7302
DNA (666bp) protein (222aa)
Outer membrane chaperone Skp (OmpH) n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SH7_SOLUE
outer membrane chaperone Skp; K06142 outer membrane protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
outer membrane chaperone Skp
13_1_40cm_2_scaffold_1863_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(7305..7601)
DNA (297bp) protein (99aa)
id=12554195 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_2_scaffold_1863_9
Smithella sp. ME-1, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7605..9059)
DNA (1455bp) protein (485aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.-
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Smithella sp. ME-1 RepID=V4FHB2_9DELT rbh
13_1_40cm_2_scaffold_1863_10
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(9073..10470)
DNA (1398bp) protein (466aa)
Cobyrinic acid A,C-diamide synthase n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NS98_GRAMM
cobyrinic acid A,C-diamide synthase
Cobyrinic acid A,C-diamide synthase {ECO:0000256|HAMAP-Rule:MF_00027}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensi
13_1_40cm_2_scaffold_1863_11
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

10490..11533
DNA (1044bp) protein (348aa)
Methylthioribose-1-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000255|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000255|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:00
Methylthioribose-1-phosphate isomerase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=MTNA_KORVE
translation initiation factor 2B subunit I
13_1_40cm_2_scaffold_1863_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


11533..12594
DNA (1062bp) protein (354aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-th
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=TSAD_KORVE
DNA-binding/iron metalloprotein/AP endonuclease
13_1_40cm_2_scaffold_1863_13
unknown

Not on your lists

12764..13078
DNA (315bp) protein (105aa)

This feature has no annotations

13_1_40cm_2_scaffold_1863_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(13151..13711)
DNA (561bp) protein (187aa)
Ribosome-recycling factor n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IV34_KORVE
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=454194 species="Bacteria;
ribosome recycling factor
13_1_40cm_2_scaffold_1863_15
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13740..14450)
DNA (711bp) protein (237aa)
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] Tax=RBG_13_Deltaproteobacteria_47_9_curated
Uridylate kinase id=8266233 bin=CD_OP8_4m species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
pyrH; uridylate kinase
Displaying 15 items

View Taxonomy