ggKbase home page

13_1_40cm_2_scaffold_512

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_512_1
unknown

Not on your lists

comp(3..185)
DNA (183bp) protein (61aa)

This feature has no annotations

13_1_40cm_2_scaffold_512_2
unknown

Not on your lists

comp(325..768)
DNA (444bp) protein (148aa)

This feature has no annotations

13_1_40cm_2_scaffold_512_3
Deferribacter desulfuricans, Deferribacter, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

comp(734..1033)
DNA (300bp) protein (100aa)
Flagellar motor switch protein FliN/FliY n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PBE2_DEFDS
fliN; flagellar motor switch protein FliN/FliY
Flagellar motor switch protein FliN/FliY {ECO:0000313|EMBL:BAI79915.1}; TaxID=639282 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Deferribacter.;" source="Deferribacter d
13_1_40cm_2_scaffold_512_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(1014..1922)
DNA (909bp) protein (303aa)
Flagellar motor switch protein FliM n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P027_9BACT
Flagellar motor switch protein FliM {ECO:0000313|EMBL:CDM65653.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
flagellar motor switch protein FliM
13_1_40cm_2_scaffold_512_5
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1929..2672)
DNA (744bp) protein (248aa)
RNA polymerase sigma factor n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P026_9BACT
fliA; RNA polymerase sigma factor for flagellar operon Tax=RBG_13_Deltaproteobacteria_65_10_curated
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
13_1_40cm_2_scaffold_512_6
Planomicrobium sp. ES2, Planomicrobium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2669..3805)
DNA (1137bp) protein (379aa)
GTP-binding signal recognition particle SRP54 G-domain protein n=1 Tax=Planococcus donghaensis MPA1U2 RepID=E7RJ23_9BACL
Flagellar biosynthesis protein FlhF {ECO:0000313|EMBL:CEG24321.1}; TaxID=1499687 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Planomicrobium.;" source="Planomicrobium sp. ES2.;"
flagellar biosynthetic protein flhf
13_1_40cm_2_scaffold_512_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(3802..5835)
DNA (2034bp) protein (678aa)
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:CDM65649.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
flagellar biosynthesis protein FlhA; K02400 flagellar biosynthesis protein FlhA id=12556374 bin=CNBR_ACIDO species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
flagellar biosynthesis protein FlhA
13_1_40cm_2_scaffold_512_8
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5881..6924)
DNA (1044bp) protein (348aa)
flagellar biosynthesis protein FlhB n=1 Tax=Geobacillus caldoxylosilyticus RepID=UPI00030D4E79
flagellar biosynthetic protein FlhB; K02401 flagellar biosynthetic protein FlhB Tax=RBG_13_Deltaproteobacteria_52_11b_curated
flhB; flagellar biosynthesis protein FlhB
13_1_40cm_2_scaffold_512_9
RBG_13_Deltaproteobacteria_58_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6926..7675)
DNA (750bp) protein (250aa)
flagellar biosynthetic protein FliR; K02421 flagellar biosynthetic protein FliR Tax=RBG_13_Deltaproteobacteria_58_19_curated
flagellar biosynthetic protein FliR; K02421 flagellar biosynthetic protein FliR id=12556376 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
flagellar biosynthetic protein FliR
13_1_40cm_2_scaffold_512_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(7679..7948)
DNA (270bp) protein (90aa)
Flagellar biosynthesis pathway, component FliQ {ECO:0000313|EMBL:CDM65628.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliph
fliQ; flagellar biosynthesis protein FilQ id=12556377 bin=CNBR_ACIDO species=Lawsonia intracellularis genus=Lawsonia taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
fliQ; flagellar biosynthetic protein fliQ
13_1_40cm_2_scaffold_512_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(7941..8660)
DNA (720bp) protein (240aa)
fliP; flagellar biosynthesis protein FliP (EC:3.1.1.3)
Flagellar biosynthetic protein FliP n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3EAW3_GEOLS
Flagellar biosynthetic protein FliP {ECO:0000313|EMBL:CDM65629.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
13_1_40cm_2_scaffold_512_12
unknown

Not on your lists

comp(8657..8893)
DNA (237bp) protein (79aa)

This feature has no annotations

13_1_40cm_2_scaffold_512_13
Exiguobacterium sp. S17, Exiguobacterium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8890..9186)
DNA (297bp) protein (99aa)
CheC, inhibitor of MCP methylation / FliN fusion protein n=1 Tax=Exiguobacterium sp. S17 RepID=S3FMH7_9BACL
CheC, inhibitor of MCP methylation / FliN fusion protein {ECO:0000313|EMBL:EPE63099.1}; TaxID=856854 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguoba
fliN; flagellar motor switch protein FliN
13_1_40cm_2_scaffold_512_14
unknown

Not on your lists

comp(9454..9645)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_2_scaffold_512_15
unknown

Not on your lists

comp(9748..10206)
DNA (459bp) protein (153aa)

This feature has no annotations

13_1_40cm_2_scaffold_512_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(10203..11510)
DNA (1308bp) protein (436aa)
Type III secretion system ATPase, FliI/YscN {ECO:0000313|EMBL:CDM65639.1}; EC=3.6.3.15 {ECO:0000313|EMBL:CDM65639.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrin
FliI/YscN family ATPase (EC:3.6.3.14)
ATPase, FliI/YscN family n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6D2X0_PAESJ
13_1_40cm_2_scaffold_512_17
RBG_16_Desulfobacca_58_9_curated, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11513..12097)
DNA (585bp) protein (195aa)
Flagellar assembly protein FliH n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FJU6_DESAA
flagellar assembly protein FliH; K02411 flagellar assembly protein FliH Tax=RBG_16_Desulfobacca_58_9_curated
flagellar assembly protein FliH
13_1_40cm_2_scaffold_512_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(12081..13085)
DNA (1005bp) protein (335aa)
Flagellar motor switch protein FliG n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P2Z9_9BACT
flagellar motor switch protein flig
Flagellar motor switch protein FliG {ECO:0000313|EMBL:CDM65641.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
13_1_40cm_2_scaffold_512_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(13082..14761)
DNA (1680bp) protein (560aa)
fliF; flagellar MS-ring protein; K02409 flagellar M-ring protein FliF id=12556390 bin=CNBR_ACIDO species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
flagellar M-ring protein FliF
13_1_40cm_2_scaffold_512_20
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14783..15076)
DNA (294bp) protein (98aa)
Flagellar hook-basal body complex protein FliE n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W3P5_DESIS
hypothetical protein Tax=RBG_16_Deltaproteobacteria_42_7_curated
flagellar hook-basal body complex subunit FliE
13_1_40cm_2_scaffold_512_21
Halothermothrix orenii, Halothermothrix, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15082..15468)
DNA (387bp) protein (129aa)
Flagellar basal body rod protein FlgB n=1 Tax=Geobacillus sp. G11MC16 RepID=B4BJ48_9BACI
flagellar basal-body rod protein FlgB
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; TaxID=373903 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halothermothrix.;" source="Halothermot
13_1_40cm_2_scaffold_512_22
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15774..16058
DNA (285bp) protein (95aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas fluorescens WH6 RepID=E2XVY5_PSEFL
Uncharacterized protein {ECO:0000313|EMBL:EFQ61796.1}; TaxID=746360 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluore
Displaying 22 items

View Taxonomy