ggKbase home page

13_1_40cm_2_scaffold_6716

Search features with annotation key words

Displaying 17 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_6716_1
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(1..1236)
DNA (1236bp) protein (412aa)
WD40 repeat-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DP20_SINAD
WD40 repeat-containing protein
WD40 repeat-containing protein {ECO:0000313|EMBL:AGA30565.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulispha
13_1_40cm_2_scaffold_6716_2
Pseudanabaena sp. PCC 7367, Pseudanabaena, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

2115..2468
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Pseudanabaena sp. PCC 7367 RepID=K9SEE5_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY68987.1}; TaxID=82654 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Pseudanabaena.;" source="Pseudanabaena sp. PCC 7367.;"
13_1_40cm_2_scaffold_6716_3
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

2477..2824
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9EQN7_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:EKU98993.1}; TaxID=102129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7375.;"
hypothetical protein
13_1_40cm_2_scaffold_6716_4
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3028..3501)
DNA (474bp) protein (158aa)
id=24491234 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
id=24491234 Tax=RBG_16_Planctomycetes_64_10_curated
13_1_40cm_2_scaffold_6716_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3510..4121)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B580BB
Uncharacterized protein {ECO:0000313|EMBL:KCZ70608.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;"
hypothetical protein
13_1_40cm_2_scaffold_6716_6
unknown

Not on your lists

4228..4533
DNA (306bp) protein (102aa)

This feature has no annotations

13_1_40cm_2_scaffold_6716_trna_2
unknown

Not on your lists

comp(4645..4728)
DNA (84bp)
transferRNA
13_1_40cm_2_scaffold_6716_7
Arcobacter sp. L, Arcobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4971..5426)
DNA (456bp) protein (152aa)
Phage integrase n=1 Tax=Arcobacter sp. L RepID=G2HUJ3_9PROT
phage integrase family site specific recombinase
Phage integrase {ECO:0000313|EMBL:BAK72796.1}; TaxID=944547 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Arcobacter.;" source="Arcobacter sp. L.;"
13_1_40cm_2_scaffold_6716_8
unknown

Not on your lists

5874..6182
DNA (309bp) protein (103aa)

This feature has no annotations

13_1_40cm_2_scaffold_6716_9
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6232..8433
DNA (2202bp) protein (734aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=35554 species="Bacteria; Proteobacteria; Delta
Ribonuclease R n=2 Tax=Geobacter sulfurreducens RepID=D7AIS0_GEOSK
rnr; exoribonuclease R
13_1_40cm_2_scaffold_6716_trna_1
unknown

Not on your lists

8447..8520
DNA (74bp)
transferRNA
13_1_40cm_2_scaffold_6716_10
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

8565..9971
DNA (1407bp) protein (469aa)
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
tRNA(Ile)-lysidine synthase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=TILS_SOLUE
tRNA(Ile)-lysidine synthetase
13_1_40cm_2_scaffold_6716_11
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

10073..11962
DNA (1890bp) protein (630aa)
FtsH peptidase; K03798 cell division protease FtsH [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
ATP-dependent metalloprotease n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003693A38
FtsH peptidase
13_1_40cm_2_scaffold_6716_12
unknown

Not on your lists

comp(12096..12515)
DNA (420bp) protein (140aa)

This feature has no annotations

13_1_40cm_2_scaffold_6716_13
uncultured Acidobacterium sp., Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

12881..13696
DNA (816bp) protein (272aa)
Putative uncharacterized protein n=1 Tax=uncultured Acidobacterium sp. RepID=Q83XG8_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AAP33284.1}; TaxID=114706 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium; environmental samples.;" source="unc
hypothetical protein
13_1_40cm_2_scaffold_6716_14
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

13726..14388
DNA (663bp) protein (221aa)
YbbR-like protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
hypothetical protein id=24526498 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_2_scaffold_6716_15
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

14388..15695
DNA (1308bp) protein (436aa)
glmM; phosphoglucosamine mutase (EC:5.4.2.10); K03431 phosphoglucosamine mutase [EC:5.4.2.10] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
phosphoglucosamine mutase n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000376793B
phosphoglucosamine mutase
Displaying 17 items

View Taxonomy