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13_1_40cm_2_scaffold_2542

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_2542_1
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..362)
DNA (360bp) protein (120aa)
response regulator receiver modulated CheB methylesterase (EC:3.1.1.61)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=203119 species="Bacteria; Firmicutes; Clostridia
Chemotaxis response regulator protein-glutamate methylesterase n=7 Tax=Clostridium thermocellum RepID=A3DJ91_CLOTH
13_1_40cm_2_scaffold_2542_2
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(359..1315)
DNA (957bp) protein (319aa)
Response regulator receiver protein n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UF43_ANASK
response regulator receiver protein Tax=RBG_13_OP8X_37_8_curated
response regulator receiver protein
13_1_40cm_2_scaffold_2542_3
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1312..1782)
DNA (471bp) protein (157aa)
CheW protein n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SJU5_THEM7
CheW protein
CheW protein {ECO:0000313|EMBL:ADU52178.1}; Flags: Precursor;; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" sour
13_1_40cm_2_scaffold_2542_4
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1763..3784)
DNA (2022bp) protein (674aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae;
CheA signal transduction histidine kinase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G689_GEOUR
CheA signal transduction histidine kinase
13_1_40cm_2_scaffold_2542_5
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(3777..5195)
DNA (1419bp) protein (473aa)
Response regulator, PATAN and FRGAF domain-containing n=2 Tax=Geobacter sulfurreducens RepID=D7ALC8_GEOSK
response regulator receiver protein Tax=RBG_13_OP8X_37_8_curated
response regulator, PATAN and FRGAF domain-containing
13_1_40cm_2_scaffold_2542_6
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(5358..5528)
DNA (171bp) protein (57aa)
N utilization substance protein B homolog n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LD81_CHLTF
NusB antitermination factor; K03625 N utilization substance protein B Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
transcription antitermination factor NusB
13_1_40cm_2_scaffold_2542_7
unknown

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comp(5591..5728)
DNA (138bp) protein (46aa)

This feature has no annotations

13_1_40cm_2_scaffold_2542_8
RBG_13_Deltaproteobacteria_60_28_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5733..6203)
DNA (471bp) protein (157aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=RBG_13_Deltaproteobacteria_60_28_curated
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KFN3_9FIRM
ribH; 6,7-dimethyl-8-ribityllumazine synthase
13_1_40cm_2_scaffold_2542_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(6311..7111)
DNA (801bp) protein (267aa)
Putative uncharacterized protein n=1 Tax=Moorea producens 3L RepID=F4XVH4_9CYAN
hypothetical protein Tax=RBG_16_Acidobacteria_70_10_curated
hypothetical protein
13_1_40cm_2_scaffold_2542_10
RBG_19FT_COMBO_Deltaproteobacteria_58_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7108..8025)
DNA (918bp) protein (306aa)
PfkB domain protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WRB4_GEOS8
sugar kinase
ribokinase-like protein Tax=RBG_19FT_COMBO_Deltaproteobacteria_58_16_curated
13_1_40cm_2_scaffold_2542_11
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(8029..8886)
DNA (858bp) protein (286aa)
5'-methylthioadenosine phosphorylase (EC:2.4.2.28) Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
S-methyl-5''''-thioadenosine phosphorylase n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00035EC0A8
methylthioadenosine phosphorylase
13_1_40cm_2_scaffold_2542_12
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(8976..9812)
DNA (837bp) protein (279aa)
Putative esterase of the alpha-beta hydrolase superfamily n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEV8_CHLTF
putative alpha-beta hydrolase superfamily esterase
Putative esterase of the alpha-beta hydrolase superfamily {ECO:0000313|EMBL:AEP12491.1}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chlo
13_1_40cm_2_scaffold_2542_13
unknown

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comp(9809..10183)
DNA (375bp) protein (125aa)

This feature has no annotations

13_1_40cm_2_scaffold_2542_14
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10388..12196
DNA (1809bp) protein (603aa)
GAF sensor-containing diguanylate cyclase Tax=RifOxyA12_full_Proteobacteria_58_15_curated
Diguanylate cyclase with GAF sensor id=3718071 bin=GWC2_ACD39_50_8 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_ACD39_50_8 organism_group=ACD39
GAF sensor-containing diguanylate cyclase
13_1_40cm_2_scaffold_2542_15

Not on your lists

comp(12193..13125)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0ML51_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EQB63881.1}; TaxID=1379698 species="Bacteria.;" source="candidate division Zixibacteria bacterium RBG-1.;"
butyryl-CoA:acetate CoA transferase
13_1_40cm_2_scaffold_2542_16
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(13076..13780)
DNA (705bp) protein (235aa)
3-oxoacid CoA-transferase, subunit A; K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
3-oxoacid CoA-transferase subunit A id=3062985 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
3-oxoacid CoA-transferase subunit A
13_1_40cm_2_scaffold_2542_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(13777..15117)
DNA (1341bp) protein (447aa)
ArgK protein; K07588 LAO/AO transport system kinase [EC:2.7.-.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
argK; LAO/AO transport system kinase id=12555129 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
LAO/AO transport system ATPase
13_1_40cm_2_scaffold_2542_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(15117..16277)
DNA (1161bp) protein (387aa)
acdA; acyl-CoA dehydrogenase (EC:1.3.99.-)
Acyl-CoA dehydrogenase n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F3N3_ACIC5
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:CDM64199.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
13_1_40cm_2_scaffold_2542_19
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

16603..17055
DNA (453bp) protein (151aa)
Heat shock protein Hsp20 n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML01_9BACT
Heat shock protein Hsp20
Heat shock protein Hsp20 {ECO:0000313|EMBL:CBE69841.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
13_1_40cm_2_scaffold_2542_20
RBG_13_Aminicenantes_59_9_curated, Aminicenantes, Bacteria

Not on your lists

17186..18604
DNA (1419bp) protein (473aa)
sulfatase Tax=RBG_13_Aminicenantes_59_9_curated
sulfatase id=24398917 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Arylsulfatase A and related enzymes
13_1_40cm_2_scaffold_2542_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(18601..19725)
DNA (1125bp) protein (375aa)
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MH45_RHOM4
13_1_40cm_2_scaffold_2542_22
RLO_PLX_64_10, Bacteria

Not on your lists

comp(19722..20495)
DNA (774bp) protein (258aa)
Putative BatD/BatE protein n=1 Tax=Bacteroides sp. CAG:1060 RepID=R5C0J6_9BACE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
DNA uptake lipoprotein
13_1_40cm_2_scaffold_2542_23
RLO_PLX_64_10, Bacteria

Not on your lists

comp(20492..22444)
DNA (1953bp) protein (651aa)
hypothetical protein n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B4B37E
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
batD; aerotolerance-related exported protein
13_1_40cm_2_scaffold_2542_24
unknown

Not on your lists

comp(22441..22560)
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_40cm_2_scaffold_2542_25
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(22511..23095)
DNA (585bp) protein (195aa)
TPR repeat protein Tax=RBG_13_OP8X_37_8_curated
von Willebrand factor type A domain protein id=2716765 bin=GWC2_Elusimicrobia_64_44 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good
ycf3_3; Photosystem I assembly protein Ycf3
13_1_40cm_2_scaffold_2542_26
RLO_PLX_64_10, Bacteria

Not on your lists

comp(23092..24135)
DNA (1044bp) protein (348aa)
Mg-chelatase subunit ChlD Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
von Willebrand factor type A id=1862453 bin=GWE2_RBX1_39_32 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria rbh
BatB protein
13_1_40cm_2_scaffold_2542_27
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

comp(24179..25177)
DNA (999bp) protein (333aa)
Double-transmembrane region domain protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XZ13_9BACT rbh
Double-transmembrane region domain protein {ECO:0000313|EMBL:EHO42084.1}; TaxID=880073 species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
hypothetical protein
13_1_40cm_2_scaffold_2542_28
Candidatus Magnetobacterium bavaricum, Candidatus Magnetobacterium, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(25174..25758)
DNA (585bp) protein (195aa)
Uncharacterized protein {ECO:0000313|EMBL:KJU84419.1}; TaxID=29290 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetobacterium.;" source="Candidatus Magnetobacterium bav
Uncharacterized protein id=2883201 bin=GWF2_OP3_43_52 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
Displaying 28 items

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