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13_1_40cm_2_scaffold_34123

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Displaying 13 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_34123_1
R_Omnitrophica_44_11, Omnitrophica, Bacteria

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1..1122
DNA (1122bp) protein (374aa)
Laminin G sub domain 2 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMI8_9BACT
PKD domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Omnitrophica_44_11_curated
Mo-co oxidoreductase dimerization domain-containing protein
13_1_40cm_2_scaffold_34123_2
unknown

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comp(1309..1878)
DNA (570bp) protein (190aa)

This feature has no annotations

13_1_40cm_2_scaffold_34123_3

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comp(1875..4112)
DNA (2238bp) protein (746aa)
Uncharacterized protein {ECO:0000313|EMBL:KKO10970.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative glycosyltransferase id=2269157 bin=GWA2_Elusimicrobia_66_18 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
fibronectin, type III domain-containing protein
13_1_40cm_2_scaffold_34123_4
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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4754..5245
DNA (492bp) protein (164aa)
Anti-sigma-factor antagonist id=4337253 bin=GWC2_Ignavibacteria_56_12 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
anti-sigma-factor antagonist Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
anti-sigma-factor antagonist
13_1_40cm_2_scaffold_34123_5
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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5227..5601
DNA (375bp) protein (125aa)
anti-sigma-factor antagonist Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
Anti-sigma-factor antagonist id=4902081 bin=GWC2_Ignavibacteria_38_9 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
anti-sigma-factor antagonist
13_1_40cm_2_scaffold_34123_6
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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5615..5998
DNA (384bp) protein (128aa)
Antagonist protein RsbS id=4337252 bin=GWC2_Ignavibacteria_56_12 species=Mycobacterium xenopi genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
anti-sigma-factor antagonist Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
rsbS; putative sigma activity regulator RsbS
13_1_40cm_2_scaffold_34123_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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6064..6459
DNA (396bp) protein (132aa)
serine/threonine protein kinase n=1 Tax=Methylosarcina fibrata RepID=UPI000369E7F3
Anti-sigma regulatory factor (Ser/Thr protein kinase) {ECO:0000313|EMBL:KCZ71458.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae;
anti-sigma regulatory factor, serine/threonine protein kinase
13_1_40cm_2_scaffold_34123_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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6459..7058
DNA (600bp) protein (200aa)
Stage II sporulation protein E (SpoIIE) {ECO:0000313|EMBL:KCZ71459.1}; EC=3.1.3.3 {ECO:0000313|EMBL:KCZ71459.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Can
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI0003615051
rsbX; sigma activity regulating serine phosphatase
13_1_40cm_2_scaffold_34123_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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7063..7422
DNA (360bp) protein (120aa)
Sensory box sensor histidine kinase id=4927125 bin=GWA2_Ignavibacteria_55_11 species=Dehalococcoides mccartyi genus=Dehalococcoides taxon_order=Dehalococcoidales taxon_class=Dehalococcoidia phylum=Chloroflexi tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
PAS domain S-box {ECO:0000313|EMBL:KCZ71460.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source=
hypothetical protein
13_1_40cm_2_scaffold_34123_10
CSP1_5_NC10, NC10, Bacteria

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7419..7997
DNA (579bp) protein (193aa)
GAF sensor signal transduction histidine kinase (EC:2.7.13.3)
putative PAS/PAC sensor histidine kinase id=14430686 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
putative PAS/PAC sensor histidine kinase Tax=CSP1_5_NC10
13_1_40cm_2_scaffold_34123_11
CSP1_5_NC10, NC10, Bacteria

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7969..8601
DNA (633bp) protein (211aa)
two component LuxR family transcriptional regulator id=14430684 bin=bin3_NC10 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin3_NC10 organism_group=NC10
two component LuxR family transcriptional regulator Tax=CSP1_5_NC10
two component LuxR family transcriptional regulator
13_1_40cm_2_scaffold_34123_12
CSP1_5_NC10, NC10, Bacteria

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8949..9581
DNA (633bp) protein (211aa)
two component LuxR family transcriptional regulator id=14430684 bin=bin3_NC10 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin3_NC10 organism_group=NC10
two component LuxR family transcriptional regulator Tax=CSP1_5_NC10
LuxR family transcriptional regulator
13_1_40cm_2_scaffold_34123_13

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9700..10233
DNA (534bp) protein (178aa)
Transcription antitermination protein NusG (Fragment) n=1 Tax=mine drainage metagenome RepID=T1BE69_9ZZZZ
Transcription antitermination protein NusG {ECO:0000313|EMBL:EQD71221.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage m
NusG antitermination factor
Displaying 13 items

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