ggKbase home page

13_1_40cm_2_scaffold_5225

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_5225_1
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..322
DNA (321bp) protein (107aa)
aminohydrolase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036B94B0
Uncharacterized protein {ECO:0000313|EMBL:CCD99606.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
aminohydrolase domain-containing protein
13_1_40cm_2_scaffold_5225_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

356..1201
DNA (846bp) protein (282aa)
dienelactone hydrolase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45] id=14626572 bin=bin7_NC10_sister species=Azorhizobium caulinodans genus=Azorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
dienelactone hydrolase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=CSP1_6_Rokubacteria
dienelactone hydrolase
13_1_40cm_2_scaffold_5225_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1402..2244)
DNA (843bp) protein (281aa)
Thioesterase superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thioesterase superfamily protein id=5020384 bin=GWA2_Methylomirabilis_73_35 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_5225_4
unknown

Not on your lists

comp(2270..3205)
DNA (936bp) protein (312aa)

This feature has no annotations

13_1_40cm_2_scaffold_5225_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

3642..4010
DNA (369bp) protein (123aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein; K08999 hypothetical protein id=14626745 bin=bin7_NC10_sister species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_5225_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4013..4948
DNA (936bp) protein (312aa)
26S proteasome subunit P45 family (EC:3.6.4.3) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Proteasome-activating nucleotidase id=4830684 bin=GWC2_Methylomirabilis_70_16 species=Thermosphaera aggregans genus=Thermosphaera taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
proteasome-activating nucleotidase
13_1_40cm_2_scaffold_5225_7
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

4954..5859
DNA (906bp) protein (302aa)
Methyltransferase n=1 Tax=Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602) RepID=B5GZA9_STRC2
ubiquinone/menaquinone biosynthesis methylase
methyltransferase type 11 Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
13_1_40cm_2_scaffold_5225_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5859..6278
DNA (420bp) protein (140aa)
thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4830683 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
thioesterase superfamily protein
13_1_40cm_2_scaffold_5225_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6300..7316
DNA (1017bp) protein (339aa)
ABC transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter id=14626741 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ABC transporter
13_1_40cm_2_scaffold_5225_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7313..8080
DNA (768bp) protein (256aa)
multi-copper enzyme maturation ABC transporter permease Tax=GWA2_Rokubacteria_73_35_curated
multi-copper enzyme maturation ABC transporter permease id=14626740 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
multi-copper enzyme maturation ABC transporter permease
13_1_40cm_2_scaffold_5225_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8077..9612
DNA (1536bp) protein (512aa)
Putative ABC-type uncharacterized transport system involved in gliding motility auxiliary component-like id=4034167 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gliding motility ABC transporter auxillary protein Tax=GWA2_Rokubacteria_73_35_curated
gliding motility ABC transporter auxillary protein
13_1_40cm_2_scaffold_5225_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9624..11384
DNA (1761bp) protein (587aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626738 bin=bin7_NC10_sister species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_5225_13
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(11421..12386)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI00036724AA
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein
13_1_40cm_2_scaffold_5225_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12526..13179
DNA (654bp) protein (218aa)
Beta-lactamase-like id=4034158 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Beta-lactamase-like Tax=GWA2_Rokubacteria_73_35_curated
Beta-lactamase-like
13_1_40cm_2_scaffold_5225_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13184..13864)
DNA (681bp) protein (227aa)
Putative uncharacterized protein id=4034157 bin=GWA2_Methylomirabilis_73_35 species=Agrobacterium fabrum genus=Agrobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_2_scaffold_5225_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13861..14499)
DNA (639bp) protein (213aa)
oxidoreductase, short chain dehydrogenase/reductase family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Short-chain dehydrogenase/reductase SDR id=4034156 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR
13_1_40cm_2_scaffold_5225_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14506..15231
DNA (726bp) protein (242aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=14626734 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_5225_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15190..15870)
DNA (681bp) protein (227aa)
alpha/beta hydrolase; K07018 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Alpha/beta hydrolase family protein id=4034153 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha/beta hydrolase
13_1_40cm_2_scaffold_5225_19
unknown

Not on your lists

comp(15867..16049)
DNA (183bp) protein (61aa)

This feature has no annotations

Displaying 19 items

View Taxonomy