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13_1_40cm_2_scaffold_6723

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_6723_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(377..1594)
DNA (1218bp) protein (406aa)
two component, sigma54 specific, transcriptional regulator, Fis family; K07714 two-component system, NtrC family, response regulator AtoC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=1767173 bin=GWA2_Methylomirabilis_73_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component, sigma54 specific, transcriptional regulator, Fis family
13_1_40cm_2_scaffold_6723_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1591..3087)
DNA (1497bp) protein (499aa)
signal transduction histidine kinase NtrB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Signal transduction histidine kinase, nitrogen specific, NtrB id=1767175 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_6723_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(3210..3578)
DNA (369bp) protein (123aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_2_scaffold_6723_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3575..5020)
DNA (1446bp) protein (482aa)
putative two-component histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidine kinase id=1767179 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integral membrane sensor signal transduction histidine kinase
13_1_40cm_2_scaffold_6723_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5017..5448)
DNA (432bp) protein (144aa)
thioesterase superfamily protein; K02614 acyl-CoA thioesterase [EC:3.1.2.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thioesterase; phenylacetic acid degradation protein; ComA id=14625781 bin=bin7_NC10_sister species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_6723_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5547..6524
DNA (978bp) protein (326aa)
luciferase-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Coenzyme f420-dependent n5,n10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases id=3763002 bin=GWA2_Methylomirabilis_73_35 species=uncultured Chloroflexi bacterium HF0200_06I16 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase-like protein
13_1_40cm_2_scaffold_6723_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6621..7763
DNA (1143bp) protein (381aa)
cofG; FO synthase subunit 1; K11779 FO synthase [EC:2.5.1.-] Tax=GWA2_Rokubacteria_73_35_curated
FO synthase subunit 1 id=3763000 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cofG; FO synthase subunit 1
13_1_40cm_2_scaffold_6723_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7741..9015
DNA (1275bp) protein (425aa)
cofH; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase (EC:2.5.1.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
cofH; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase (EC:2.5.1.-)
FO synthase subunit 2 id=3762998 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_6723_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9084..9371
DNA (288bp) protein (96aa)
hupB; transcriptional dual regulator HU-beta; K03530 DNA-binding protein HU-beta Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Transcriptional dual regulator HU-beta id=3762996 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hupB; transcriptional dual regulator HU-beta
Displaying 9 items

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