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13_1_40cm_2_scaffold_9003

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_9003_1
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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comp(2..610)
DNA (609bp) protein (203aa)
nuoB; NADH dehydrogenase I subunit B; K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
NAD; NADH-ubiquinone oxidoreductase 20 kDa subunit (NADH dehydrogenase subunit 10) (EC:1.6.5.3) id=14626932 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
nuoB; NADH dehydrogenase I subunit B
13_1_40cm_2_scaffold_9003_2
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(601..954)
DNA (354bp) protein (118aa)
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
nuoA; NADH-quinone oxidoreductase, subunit A id=14626933 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
NADH-ubiquinone/plastoquinone oxidoreductase chain 3
13_1_40cm_2_scaffold_9003_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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1193..1750
DNA (558bp) protein (186aa)
id=2696010 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=2696010 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_2_scaffold_9003_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1788..2489
DNA (702bp) protein (234aa)
rpfC; two-component system sensor-response regulator hybrid protein RpfC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sigma-54 factor interaction domain-containing protein id=2883274 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio aespoeensis genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component, sigma54 specific, fis family transcriptional regulator
13_1_40cm_2_scaffold_9003_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(2464..3930)
DNA (1467bp) protein (489aa)
ifoB_iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative indolepyruvate oxidoreductase subunit B id=4547892 bin=GWC2_Methylomirabilis_70_24 species=Bordetella holmesii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ifoB_iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit
13_1_40cm_2_scaffold_9003_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(4296..6059)
DNA (1764bp) protein (588aa)
ifoA_iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Indolepyruvate ferredoxin oxidoreductase, alpha subunit id=1906308 bin=GWA2_Methylomirabilis_73_35 species=Bordetella holmesii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein
13_1_40cm_2_scaffold_9003_trna_1
unknown

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6154..6237
DNA (84bp)
transferRNA
13_1_40cm_2_scaffold_9003_7
unknown

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6316..6486
DNA (171bp) protein (57aa)

This feature has no annotations

13_1_40cm_2_scaffold_9003_trna_2
unknown

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6713..6785
DNA (73bp)
transferRNA
13_1_40cm_2_scaffold_9003_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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6972..9068
DNA (2097bp) protein (699aa)
GAF sensor hybrid histidine kinase (EC:2.7.13.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
multi-sensor signal transduction histidine kinase id=14626073 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
multi-sensor hybrid histidine kinase
13_1_40cm_2_scaffold_9003_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9022..9822)
DNA (801bp) protein (267aa)
Glycosyl transferase 2 family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase 2 family protein id=4379990 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus alvei genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Glycosyl transferase family 2
13_1_40cm_2_scaffold_9003_10
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

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comp(9845..11146)
DNA (1302bp) protein (434aa)
DegT/DnrJ/EryC1/StrS aminotransferase n=1 Tax=Trichodesmium erythraeum (strain IMS101) RepID=Q112T5_TRIEI rbh
DegT/DnrJ/EryC1/StrS aminotransferase; K12452 CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
DegT/DnrJ/EryC1/StrS aminotransferase
13_1_40cm_2_scaffold_9003_11
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(11146..11610)
DNA (465bp) protein (155aa)
dTDP-4-dehydrorhamnose 35-epimerase-like protein (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme {ECO:0000313|EMBL:AEP13774.1}; EC=5.1.3.13 {ECO:0000313|EMBL:AEP13774.1};; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4;
dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LLH8_CHLTF
13_1_40cm_2_scaffold_9003_12
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(11607..12158)
DNA (552bp) protein (184aa)
CDP-glucose 4,6-dehydratase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I1F1_CALAS
rfbG; CDP-glucose 4,6-dehydratase
CDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:BAL99088.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain D
Displaying 14 items

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